Dr. Joël Pothier

Dr. Joël Pothier

Dr. Joël Pothier
ZHAW Life Sciences und Facility Management
Einsiedlerstrasse 29
8820 Wädenswil

+41 (0) 58 934 53 21
joel.pothier@zhaw.ch

Persönliches Profil

Tätigkeit an der ZHAW als

Wissenschaftlicher Mitarbeiter Forschungsgruppe Umweltgenomik und Systembiologie

Arbeits- und Forschungsschwerpunkte, Spezialkenntnisse

Mikrobielle Ökologie
Biochemie
Molekulare Biologie
Bioinformatik
Genomik
Transcriptomik
Proteomik
Lehrer Assistent ("moniteur" und "ATER" Universität Lyon 1)

Aus- und Fortbildung

Bachelor in Wissenschaft in Biochemie - 2001 – Universität Limoges (Frankreich)
Master in Wissenschaft - 1. Jahr: Molekulare und Zelluläre Biologie - 2002 – Universität Limoges (Frankreich)
Master in Wissenschaft - 2. Jahr: Mikrobielle Ökologie - 2003 - Universität Lyon 1 (Frankreich)
Doktor in Mikrobielle Ökologie - 2007 – Universität Lyon 1 (Frankreich)

Mitglied in Netzwerken

Projekte

Publikationen

; Duffy, Brion; ; Pothier, Joël F.,

2017.

Erwinia species identification using matrix-assisted laser desorption ionization-time of flight mass spectrometry

.

Journal of Plant Pathology.

99(Special issue),

S. 121-129.

Verfügbar unter: https://doi.org/10.21256/zhaw-1519

; Bühlmann, Andreas; Schneeberger, Pierre H. H.; Van Malderghem, Cinzia; Duffy, Brion; Maes, Martine; Pothier, Joël F.; Cottyn, Bart,

2017.

A diagnostic tool for improved detection of Xanthomonas fragariae using a rapid and highly specific LAMP assay designed with comparative genomics

.

Plant Pathology.

66(7),

S. 1094-1102.

Verfügbar unter: https://doi.org/10.1111/ppa.12665

Kamber, Tim; Pothier, Joël; Pelludat, Cosima; ; Duffy, Brion; ;

2017.

Role of the type VI secretion systems during disease interactions of Erwinia amylovora with its plant host

.

BMC Genomics.

16(628),

S. 1-12.

Verfügbar unter: https://doi.org/10.21256/zhaw-1461

Ruinelli, Michela; Blom, Jochen; Pothier, Joël F.,

2017.

Complete genome sequence of Pseudomonas viridiflava CFBP 1590: isolated from diseased cherry in France

.

Genome Announcements.

5(30),

Verfügbar unter: https://doi.org/10.21256/zhaw-1483

Rothen, Julian; Schindler, Tobias; Pothier, Joël F.; Younan, Mario; Certa, Ulrich; Daubenberger, Claudia; Pflüger, Valentin; Jores, Joerg,

2017.

Draft genome sequences of seven Streptococcus agalactiae strains isolated from Camelus dromedarius at the horn of Africa

.

Genome Announcements.

5(28),

Verfügbar unter: https://doi.org/10.21256/zhaw-1482

Schneeberger, Pierre H.H.; Pothier, Joël F.; Bühlmann, Andreas; Duffy, Brion; Beuret, Christian; Utzinger, Jürg; Frey, Jürg E.,

2017.

Development and evaluation of a bioinformatics approach for designing molecular assays for viral detection

.

PLoS ONE.

12(5),

Verfügbar unter: https://doi.org/10.21256/zhaw-1481

Saponari, Maria; ; Palkovics, László; Kuzmanović, Nemanja; Puławska, Joanna; Ruinelli, Michela; Pothier, Joël; Obradović, Aleksa; Boscia, Donato; Végh, Anita; Kałużna, Monika,

2017.

Bacterial diseases

.

In:

Quero-García, José; Hrsg., Iezzoni, Amy; Hrsg., Puławska, Joanna; Hrsg., Lang, Gregory, Hrsg.,

Cherries : Botany, Production and Uses.

Wallingford, UK:

CAB International.

Kałużna, Monika; Willems, Anne; Pothier, Joël F.; Ruinelli, Michela; Sobiczewski, Piotr; Puławska, Joanna,

2016.

Pseudomonas cerasi sp. nov. (non Griffin, 1911) isolated from diseased tissue of cherry

.

Systematic and Applied Microbiology.

39(6),

S. 370-377.

Verfügbar unter: https://doi.org/10.1016/j.syapm.2016.05.005

Ruinelli, Michela; Schneeberger, Pierre H.H; Ferrante, Patrizia; Bühlmann, Andreas; Scortichini, Marco; Vanneste, Joel L.; Duffy, Brion; Pothier, Joël F.,

2016.

Comparative genomics-informed design of two LAMP detection assays for detection of the kiwifruit pathogen Pseudomonas syringae pv. actinidiae and discrimination of isolates belonging to the pandemic biovar 3

.

Plant Pathology.

66(1),

S. 140-149.

Verfügbar unter: https://doi.org/10.1111/ppa.12551

Schneeberger, Pierre H.H.; Becker, Sören L.; Pothier, Joël F.; Duffy, Brion; N'Goran, Eliézer K.; Beuret, Christian; Frey, Jürg E.; Utzinger, Jürg,

2016.

Metagenomic diagnostics for the simultaneous detection of multiple pathogens in human stool specimens from Côte d’Ivoire : a proof-of-concept study

.

Infection, Genetics and Evolution.

40,

S. 389-397.

Verfügbar unter: https://doi.org/10.1016/j.meegid.2015.08.044

Puławska, Joanna; Kuzmanović, Nemanja; Willems, Anne; Pothier, Joël F.,

2016.

Pararhizobium polonicum sp. nov. isolated from tumors on stone fruit rootstocks

.

Systematic and Applied Microbiology.

39(3),

S. 164-169.

Verfügbar unter: https://doi.org/10.1016/j.syapm.2016.03.002

Kamber, Tim; Buchmann, Jan P.; Pothier, Joël; ; Wicker, Thomas; Duffy, Brion,

2016.

Fire blight disease reactome : RNA-seq transcriptional profile of apple host plant defence responses to Erwinia amylovora pathogen infection

.

Scientific Reports.

6(21600),

Verfügbar unter: https://doi.org/10.21256/zhaw-1462

Kałużna, Monika; Willems, Anne; Pothier, Joël F.; Ruinelli, Michela; Sobiczewski, Piotr; Puławska, Joanna,

2016.

Characterization and genetic diversity of causal agent of stone fruit bacterial canker Pseudomonas cerasi : a new pathogen of cherry

[Paper].

In:

II International Workshop on Bacterial Diseases of Stone Fruits and Nuts.

II International Workshop on Bacterial Diseases of Stone Fruits and Nuts, Izmir, Turkey, 21 April, 2015.

International Society for Horticultural Science.

9-14.

Verfügbar unter: https://doi.org/10.17660/ActaHortic.2016.1149.2

Konavko, Dmitrijs; Malchev, Svetoslav; Pothier, Joël F.; Jundzis, Māris; Moročko-Bičevska, Inga; ;

2016.

Diversity and host range of Pseudomonas in fruit tree species in Latvia

.

Acta horticulturae.

1149,

S. 25-30.

Verfügbar unter: https://doi.org/10.17660/ActaHortic.2016.1149.5

; Pothier, Joël F.; Ruinelli, Michela; ; ; Koechli, Chantal; Fabbri, Carlotta; Brandl, Helmut; Duffy, Brion; ;

2015.

Complete genome sequence of the cyanogenic phosphate-solubilizing Pseudomonas sp. strain CCOS 191 : a close relative of Pseudomonas mosseli

.

Genome Announcements.

3(3),

Verfügbar unter: https://doi.org/10.21256/zhaw-1463

Palacio-Bielsa, Ana; López-Soriano, Pablo; Bühlmann, Andreas; van Doorn, Joop; Pham, Khanh; Cambra, Miguel A.; Berruete, Isabel M.; Pothier, Joël F.; Duffy, Brion; Olmos, Antonio; López, María M.,

2015.

Evaluation of a real-time PCR and a loop-mediated isothermal amplification for detection of Xanthomonas arboricola pv. pruni in plant tissue samples

.

Journal of Microbiological Methods.

112,

S. 36-39.

Verfügbar unter: https://doi.org/10.1016/j.mimet.2015.03.005

Ziegler, Dominik; Pothier, Joël F.; Ardley, Julie; Kouakou Fossou, Romain; Pflüger, Valentin; de Meyer, Sofie; Vogel, Guido; Tonolla, Mauro; Howieson, John; Reeve, Wayne; Perret, Xavier,

2015.

Ribosomal protein biomarkers provide root nodule bacterial identification by MALDI-TOF MS

.

Applied Microbiology and Biotechnology.

99(13),

S. 5547-5562.

Verfügbar unter: https://doi.org/10.1007/s00253-015-6515-3

Brankatschk, Kerstin; Kamber, Tim; Pothier, Joël F.; Duffy, Brion; ;

2014.

Transcriptional profile of Salmonella enterica subsp. enterica serovar Weltevreden during alfalfa sprout colonization

.

Microbial Biotechnology.

7(6),

S. 528-544.

Verfügbar unter: https://doi.org/10.21256/zhaw-1467

Bühlmann, Andreas; Dreo, Tanja; ; Pothier, Joël F.; ; Ravnikar, Maja; Frey, Jürg E.; Duffy, Brion,

2014.

Phylogeography and population structure of the biologically invasive phytopathogen Erwinia amylovora inferred using minisatellites

.

Environmental Microbiology.

16(7),

S. 2112-2125.

Verfügbar unter: https://doi.org/10.1111/1462-2920.12289

van der Wolf, Jan M.; Nijhuis, Els H.; Kowalewska, Malgorzata J.; Saddler, Gerry S.; Parkinson, Neil; Elphinstone, John G.; Pritchard, Leighton; Toth, Ian K.; Lojkowska, Ewa; Potrykus, Marta; Waleron, Malgorzata; de Vos, Paul; Cleenwerck, Ilse; Pirhonen, Minna; Garlant, Linda; Hélias, Valérie; Pothier, Joël F.; Pflüger, Valentin; Duffy, Brion; Tsror, Leah; Manulis, Shula,

2014.

Dickeya solani sp. nov., a pectinolytic plant-pathogenic bacterium isolated from potato (Solanum tuberosum)

.

International Journal of Systematic and Evolutionary Microbiology.

64,

S. 768-774.

Verfügbar unter: https://doi.org/10.1099/ijs.0.052944-0

Vandroemme, Joachim; Cottyn, Bart; Pothier, Joël F.; Pflüger, Valentin; Duffy, Brion; Maes, Martine,

2013.

Xanthomonas arboricola pv. fragariae : what's in a name?

.

Plant Pathology.

62(5),

S. 1123-1131.

Verfügbar unter: https://doi.org/10.1111/ppa.12028

Socquet-Juglard, Didier; Duffy, Brion; Pothier, Joël F.; Christen, Danilo; Gessler, Cesare; Pattochi, Andrea,

2013.

Identification of a major QTL for Xanthomonas arboricola pv. pruni resistance in apricot

.

Tree Genetics and Genomes.

9(2),

S. 409-421.

Verfügbar unter: https://doi.org/10.21256/zhaw-1480

Bühlmann, Andreas; Pothier, F.; ; ; Andreou, Michael; Boonham, Neil; Duffy, Brion; Frey, Jürg E.,

2013.

Erwinia amylovora loop-mediated isothermal amplification (LAMP) assay for rapid pathogen detection and on-site diagnosis of fire blight

.

Journal of Microbiological Methods.

92(3),

S. 332-339.

Verfügbar unter: https://doi.org/10.1016/j.mimet.2012.12.017

Socquet-Juglard, Didier; Kamber, Tim; Pothier, Joël F.; Christen, Danilo; Gessler, Cesare; Duffy, Brion; Patocchi, Andrea,

2013.

Comparative RNA-Seq analysis of early-infected peach leaves by the invasive phytopathogen Xanthomonas arboricola pv. pruni

.

PLoS ONE.

8(1),

Verfügbar unter: https://doi.org/10.21256/zhaw-1478

Bühlmann, Andreas; Pothier, Joël F.; Tomlinson, Jennifer A.; Frey, Jürg F.; Boonham, N.; ; Duffy, Brion,

2012.

Genomics-informed design of loop-mediated isothermal amplification for detection of phytopathogenic Xanthomonas arboricola pv. pruni at the intraspecific level

.

Plant Pathology.

62(2),

S. 475-484.

Verfügbar unter: https://doi.org/10.1111/j.1365-3059.2012.02654.x

Publikationen vor Tätigkeit an der ZHAW

Cesbron S., Pothier J., Gironde S., Jacques M.-A., Manceau C. (2014). Development of multilocus variable-number tandem repeat analysis (MLVA) for Xanthomonas arboricola pathovars. Journal of Microbiological Methods. 100, 84-90.

Brankatschk K., Kamber T., Pothier J.F., Duffy B., Theo HM Smits T.H.M. (2014). Transcriptional profile of Salmonella enterica subsp. enterica serovar Weltevreden during alfalfa sprout colonization. Microbial biotechnology. 7, 528-544.

Palacio-Bielsa A., Pothier J.F., Roselló M., Duffy B., López M.M. (2012). Xanthomonas arboricola pv. pruni detection and identification methods. Journal of Plant Pathology. 94, S1.135-S1.146.

Campillo T., Lavire C., Malek S., Pothier J.F., Pulawska J. (2012). Tumorigenic Agrobacterium spp. Journal of Plant Pathology. 94, S1.97-S1.104.

Socquet-Juglard D., Patocchi A., Pothier J.F., Christen D., Duffy B. (2012). Evaluation of Xanthomonas arboricola pv. pruni inoculation techniques to screen for bacterial spot resistance in apricot. Journal of Plant Pathology. 94, S1.91-S1.96.

Bergsma-Vlami M., Martin W., Koenraadt H., Teunissen H., Pothier J.F., Duffy B., van Doorn J. (2012). Molecular typing of Dutch isolates of Xanthomonas arboricola pathovar pruni isolated from ornamental cherry laurel. Journal of Plant Pathology. 94, S1.29-S1.35.

Frappoli M.*, Pothier J.F.*, Défago G., Moënne-Loccoz Y. (2012). Evolutionary history of synthesis pathway genes for phloroglucinol and cyanide antimicrobials in plant-associated fluorescent pseudomonads. Molecular Phylogenetics and Evolution. 63, 877-890.
*Contributed equally as first authors

Hajri A., Pothier J.F., Fischer-Le Saux M., Bonneau S., Poussier S., Boureau T., Duffy B., Manceau C. (2012). Type three effector genes distribution and sequence analysis provides new insights into pathogenicity of plant pathogenic Xanthomonas arboricola. Applied and Environmental Microbiology. 78, 371-374.

Pothier J.F., Vorhölter F.-J., Blom J., Goesmann A., Pühler A., Smits T.H.M., Duffy B. (2011). The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis. FEMS Microbiology Letters. 323, 52-60.

Pothier J.F.*, Pagani M.C.*, Pelludat C., Ritchie D.F., Duffy B. (2011). A duplex-PCR method for species- and pathovar-level identification and detection of the quarantine plant pathogen Xanthomonas arboricola pv. pruni. Journal of Microbiological Methods. 86, 16-24.
*Contributed equally as first authors

Combes-Meynet E., Pothier J.F., Moënne-Loccoz Y., Prigent-Combaret C. (2011). The Pseudomonas secondary metabolite 2,4-diacetylphloroglucinol is a signal inducing rhizoplane expression of Azospirillum genes involved in plant-growth promotion. Molecular Plant-Microbe Interactions, 24, 271-284.

Couillerot O., Combes-Meynet E., Pothier J.F., Bellvert F., Challita E., Poirier M.-A., Rohr R., Comte G. Moënne-Loccoz Y., Prigent-Combaret C. (2011). Role of the antimicrobial compound 2,4-diacetylphloroglucinol in the impact of biocontrol Pseudomonas fluorescens F113 on Azospirillum brasilense phytostimulators. Microbiology. 157, 1694-1705.

Pothier J.F., Pelludat C., Bünter M., Genini M., Vogelsanger J., Holliger E., Duffy B. (2010). First report of the quarantine pathogen Xanthomonas arboricola pv. pruni on apricot and plum in Switzerland. Plant Pathology. 59, 404.

Pothier J.F., Prigent-Combaret C., Haurat J., Moënne-Loccoz Y., Wisniewski-Dyé F. (2008). Functional duplication of plasmid-borne nitrite reductase gene nirK in the wheat-associated plant growth-promoting rhizobacterium Azospirillum brasilense Sp245. Molecular Plant-Microbe Interactions. 21, 831-842.

Prigent-Combaret C., Blaha D., Pothier J.F., Poirier M.A., Vial L., Wisniewski F., Bally R., Moënne-Loccoz Y. (2008). Physical organization and phylogenetic analysis of acdR as leucine-responsive regulator of the 1-aminocyclopropane-1-carboxylate (ACC) deaminase gene acdS in phytobeneficial Azospirillum lipoferum 4B and other Proteobacteria. FEMS Microbiology Ecology. 65, 202-219.

Pothier J.F., Prigent-Combaret C., Weiss M., Wisniewski-Dyé F., Moënne-Loccoz Y. (2007). Promoter trap identification of wheat seed extract-induced genes in the plant growth-promoting rhizobacterium Azospirillum brasilense Sp245. Microbiology. 153, 3608-3622.

Vial L., Pothier J.F., Normand P., Moënne-Loccoz Y., Bally R., Wisnievski-Dyé F. (2004). Construction of a recA mutant of Azospirillum lipoferum and involvement of recA in phase variation. FEMS Microbiology Letter. 236, 291-299.