Dr. Joël Pothier

Dr. Joël Pothier
ZHAW
Life Sciences und Facility Management
Institut für Umwelt und Natürliche Ressourcen
Einsiedlerstrasse 29
8820 Wädenswil
Persönliches Profil
Tätigkeit an der ZHAW
Wissenschaftlicher Mitarbeiter Forschungsgruppe Umweltgenomik und Systembiologie
Arbeits- und Forschungsschwerpunkte, Spezialkenntnisse
Mikrobielle Ökologie
Biochemie
Molekulare Biologie
Bioinformatik
Genomik
Transcriptomik
Proteomik
Lehrer Assistent ("moniteur" und "ATER" Universität Lyon 1)
Aus- und Fortbildung
Doktor in Mikrobielle Ökologie - 2007 – Universität Lyon 1 (Frankreich)
Master in Wissenschaft - 2. Jahr: Mikrobielle Ökologie - 2003 - Universität Lyon 1 (Frankreich)
Master in Wissenschaft - 1. Jahr: Molekulare und Zelluläre Biologie - 2002 – Universität Limoges (Frankreich)
Bachelor in Wissenschaft in Biochemie - 2001 – Universität Limoges (Frankreich)
Mitglied in Netzwerken
- Swiss Society for Microbiology SGM-SSM (since 2010)
- Société Française de Phytopathologie SFP (2009-2015)
- Swiss Group for Mass Spectrometry SGMS (since 2015)
- COST 873 (2008-2012)
- COST FA1104 (2013-2016)
- Q-Detect (2010-2013)
- NRP68 (2013-2016)
- Dropsa (2014-2018)
- COST CA16107 (since 2016)
- COST CA16110 (since 2016)
Projekte
- ToViPoRe: Massennachweis des Tomato Brown Rugose Fruit Virus durch Hochdurchsatz-Sequenzierung / ProjektleiterIn / Projekt laufend
- Modernes Biodiversitätsmonitoring mit Next-Generation Sequencing (NGS-Methoden) / Teammitglied / Projekt laufend
- EBDOmics – Comparative genomics of Enterobacter spp. causing Bulb Decay of Onions / Stellv. ProjektleiterIn / Projekt laufend
- ChitinOMix – A multidisciplinary project to understand the effect of chitin soil amendment on the plant response, natural microbial community and the fate of human pathogenic bacteria / ProjektleiterIn / Projekt laufend
- Comparative genomics of the plant pathogen Xanthomonas arboricola pv. pruni and related xanthomonads / ProjektleiterIn / Projekt laufend
- MALDI-TOF MS for microorganism identification: from pattern recognition towards marker based approaches / ProjektleiterIn / Projekt laufend
- Fire Blight App for Central Asia / Stellv. ProjektleiterIn / Projekt abgeschlossen
- Akzeptanz einer App zur Kontaktnachverfolgung von SARS-CoV-2 in der Schweizer Bevölkerung / Teammitglied / Projekt abgeschlossen
- Induktion der Wirkstoffbildung bei Actinomyceten / Co-ProjektleiterIn / Projekt abgeschlossen
- MinION2FixID: fast and reliable legume root nodule bacteria identification using nanopore sequencing technology / Co-ProjektleiterIn / Projekt abgeschlossen
- Xhortomics: Entwicklung von diagnostischen und epidemiologischen Hilfsmitteln für die Xanthomonas hortorum Spezies Gruppe basierend auf OMICs Technologien / Co-ProjektleiterIn / Projekt abgeschlossen
- Auswirkung der Cryokonservierung auf genetischer Ebene am Beispiel der Rebe / Stellv. ProjektleiterIn / Projekt abgeschlossen
- Development of a fast and exact method for R. solanacearum detection in Swiss surface water samples / Co-ProjektleiterIn / Projekt abgeschlossen
- Characterization of nitrogen dynamics in an aquaponic system / Teammitglied / Projekt abgeschlossen
- Vergleichende Genomik zur Abklärung der Insektenpathogenizität in Pflanzenassoziierte Pseudomonaden / Teammitglied / Projekt abgeschlossen
- Sepsis-Associated Microorganisms in Brazilian Ambulatories (SAMBA) / Teammitglied / Projekt abgeschlossen
- MycoTOF - Nachweis von mykotoxinbildenden Schimmelpilzen und Mykotoxinen / Co-ProjektleiterIn / Projekt abgeschlossen
- COST Action – Sustainable production of high quality cherries for the European market / ProjektleiterIn / Projekt abgeschlossen
- DROPSA – Strategies to develop effective, innovative and practical approaches to protect major European fruit crops from pests and pathogens / ProjektleiterIn / Projekt abgeschlossen
- High-throughput proteomics of Thiodictyon synthrophicum strain Cad16T / ProjektleiterIn / Projekt abgeschlossen
- Genomik und Transkriptomik von Erwinia und Pantoea / Teammitglied / Projekt abgeschlossen
- In-depth molecular analysis of stool and water samples collected in Kampala, Uganda / ProjektleiterIn / Projekt abgeschlossen
Publikationen
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Kałużna, Monika; Prokić, Andjelka; Obradović, Aleksa; Weldon, William A.; Stockwell, Virginia O.; Pothier, Joël F.,
2023.
Frontiers in Plant Science.
14(1254107).
Verfügbar unter: https://doi.org/10.3389/fpls.2023.1254107
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Orfei, Benedetta; Pothier, Joël F.; Fenske, Linda; Blom, Jochen; Moretti, Chiaraluce; Buonaurio, Roberto; Smits, Theo H. M.,
2023.
Frontiers in Plant Science.
14(1197706).
Verfügbar unter: https://doi.org/10.3389/fpls.2023.1197706
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Li, Leilei; Kaufmann, Moritz; Makechemu, Moffat; Van Poucke, Christof; De Keyser, Ellen; Uyttendaele, Mieke; Zipfel, Cyril; Cottyn, Bart; Pothier, Joël F.,
2023.
Assessment of transcriptional reprogramming of lettuce roots in response to chitin soil amendment.
Frontiers in Plant Science.
14(1158068).
Verfügbar unter: https://doi.org/10.3389/fpls.2023.1158068
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Arend, Lavinia N.V.S.; Bergamo, Ricardo; Rocha, Fabiano B.; Bail, Larissa; Ito, Carmen; Baura, Valter A.; Balsanelli, Eduardo; Pothier, Joël F.; Rezzonico, Fabio; Pilonetto, Marcelo; Smits, Theo H.M.; Tuon, Felipe Francisco,
2023.
Dissemination of NDM-producing bacteria in Southern Brazil.
Diagnostic Microbiology and Infectious Disease.
106(2), S. 115930.
Verfügbar unter: https://doi.org/10.1016/j.diagmicrobio.2023.115930
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Pothier, Joël F.; Bolt, Valentin; Arn, Fabienne; Frasson, David; Rhyner, Nicola; Sievers, Martin,
2023.
Microbiology Resource Announcements.
12(3), S. e01225-22.
Verfügbar unter: https://doi.org/10.1128/mra.01225-22
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Sulja, Arburon; Pothier, Joël F.; Blom, Jochen; Moretti, Chiaraluce; Buonaurio, Roberto; Rezzonico, Fabio; Smits, Theo H. M.,
2022.
Comparative genomics to examine the endophytic potential of Pantoea agglomerans DAPP-PG 734.
BMC Genomics.
23(742).
Verfügbar unter: https://doi.org/10.1186/s12864-022-08966-y
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Schmautz, Zala; Walser, Jean-Claude; Espinal, Carlos A.; Gartmann, Florentina; Scott, Benjamin; Pothier, Joël F.; Frossard, Emmanuel; Junge, Ranka; Smits, Theo H. M.,
2022.
Science of the Total Environment.
852(158426).
Verfügbar unter: https://doi.org/10.1016/j.scitotenv.2022.158426
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Dia, Nay C.; Cottyn, Bart; Blom, Jochen; Smits, Theo H. M.; Pothier, Joël F.,
2022.
Frontiers in Agronomy.
4(898778).
Verfügbar unter: https://doi.org/10.3389/fagro.2022.898778
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Silva, Kayla Gisela; Martins, Leonor; Teixeira, Miguel; Pothier, Joël F.; Tavares, Fernando,
2022.
DNA markers for detection and genotyping of Xanthomonas euroxanthea.
Microorganisms.
10(6), S. 1078.
Verfügbar unter: https://doi.org/10.3390/microorganisms10061078
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Kałużna, Monika; Pothier, Joël F.,
2022.
Phytopathology.
112(8), S. 1814-1818.
Verfügbar unter: https://doi.org/10.1094/PHYTO-11-21-0484-A
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Ruinelli, Michela; Blom, Jochen; Smits, Theo H. M.; Pothier, Joël F.,
2022.
Frontiers in Microbiology.
13(804681).
Verfügbar unter: https://doi.org/10.3389/fmicb.2022.804681
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Dia, Nay C.; Morinière, Lucas; Cottyn, Bart; Bernal, Eduardo; Jacobs, Jonathan M.; Koebnik, Ralf; Osdaghi, Ebrahim; Potnis, Neha; Pothier, Joël F.,
2022.
Xanthomonas hortorum – beyond gardens : current taxonomy, genomics, and virulence repertoires.
Molecular Plant Pathology.
23(5), S. 597-621.
Verfügbar unter: https://doi.org/10.1111/mpp.13185
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Hakalová, Eliška; Čechová, Jana; Tekielska, Dorota A.; Eichmeier, Ales; Pothier, Joël F.,
2022.
Frontiers in Microbiology.
13.
Verfügbar unter: https://doi.org/10.3389/fmicb.2022.1007988
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Knecht, Leandra E.; Born, Yannick; Pelludat, Cosima; Pothier, Joël F.; Smits, Theo H. M.; Loessner, Martin J.; Fieseler, Lars,
2022.
Frontiers in Microbiology.
13(908346).
Verfügbar unter: https://doi.org/10.3389/fmicb.2022.908346
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Dia, Nay C.; Van Vaerenbergh, Johan; Van Malderghem, Cinzia; Blom, Jochen; Smits, Theo H. M.; Cottyn, Bart; Pothier, Joël F.,
2021.
Xanthomonas hydrangeae sp. nov., a novel plant pathogen isolated from Hydrangea arborescens.
International Journal of Systematic and Evolutionary Microbiology.
71(12).
Verfügbar unter: https://doi.org/10.1099/ijsem.0.005163
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Kałużna, Monika; Fischer‐Le Saux, Marion; Pothier, Joël; Jacques, Marie‐Agnès; Obradović, Aleksa; Tavares, Fernando; Stefani, Emilio,
2021.
Molecular Plant Pathology.
22(12), S. 1481-1499.
Verfügbar unter: https://doi.org/10.1111/mpp.13073
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Cottyn, B.; De Paepe, B.; Dia, Nay; Van Malderghem, C.; Pothier, Joël; Van Vaerenbergh, J.,
2021.
New Disease Reports.
43(2), S. e12008.
Verfügbar unter: https://doi.org/10.1002/ndr2.12008
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Catara, Vittoria; Cubero, Jaime; Pothier, Joël; Bosis, Eran; Bragard, Claude; Đermić, Edyta; Holeva, Maria C.; Jacques, Marie-Agnès; Petter, Francoise; Pruvost, Olivier; Robène, Isabelle; Studholme, David J.; Tavares, Fernando; Vicente, Joana G.; Koebnik, Ralf; Costa, Joana,
2021.
Trends in molecular diagnosis and diversity studies for phytosanitary regulated Xanthomonas.
Microorganisms.
9(4), S. 862.
Verfügbar unter: https://doi.org/10.3390/microorganisms9040862
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Fernandes, Camila; Martins, Leonor; Teixeira, Miguel; Blom, Jochen; Pothier, Joël; Fonseca, Nuno A.; Tavares, Fernando,
2021.
Microorganisms.
9(3), S. 624.
Verfügbar unter: https://doi.org/10.3390/microorganisms9030624
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Pothier, Joël F.; Kałużna, Monika; Prokić, Andjelka; Obradovic, Aleksa; Rezzonico, Fabio,
2021.
Phytopathology.
112(4), S. 956-960.
Verfügbar unter: https://doi.org/10.1094/PHYTO-08-21-0356-A
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Puławska, Joanna; Kałużna, Monika; Warabieda, Wojciech; Pothier, Joël F.; Gétaz, Michael; van der Wolf, Jan M.,
2020.
Transcriptome analysis of Xanthomonas fragariae in strawberry leaves.
Scientific Reports.
10(20582).
Verfügbar unter: https://doi.org/10.1038/s41598-020-77612-y
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Dia, Nay C.; Rezzonico, Fabio; Smits, Theo H. M.; Pothier, Joël F.,
2020.
Microbiology Resource Announcements.
9(41), S. e00828-20.
Verfügbar unter: https://doi.org/10.1128/MRA.00828-20
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Martins, Leonor; Fernandes, Camila; Blom, Jochen; Dia, Nay C.; Pothier, Joël F.; Tavares, Fernando,
2020.
International Journal of Systematic and Evolutionary Microbiology.
70(12), S. 6024-6031.
Verfügbar unter: https://doi.org/10.1099/ijsem.0.004386
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Gétaz, Michael; Puławska, Joanna; Smits, Theo H.M.; Pothier, Joël F.,
2020.
Microorganisms.
8(8), S. 1253.
Verfügbar unter: https://doi.org/10.3390/microorganisms8081253
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Gétaz, Michael; Blom, Jochen; Smits, Theo H. M.; Pothier, Joël F.,
2020.
Phytopathology Research.
2020(2), S. 17.
Verfügbar unter: https://doi.org/10.1186/s42483-020-00061-y
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Rothen, Julian; Sapugahawatte, Dulmini Nanayakkara; Li, Carmen; Lo, Norman; Vogel, Guido; Foucault, Frédéric; Pflüger, Valentin; Pothier, Joël; Blom, Jochen; Daubenberger, Claudia; Ip, Margaret,
2020.
Scientific Reports.
10(8788).
Verfügbar unter: https://doi.org/10.1038/s41598-020-65707-5
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Fossou, Romain K.; Pothier, Joël F.; Zézé, Adolphe; Perret, Xavier,
2020.
International Journal of Systematic and Evolutionary Microbiology.
70(2), S. 1421-1430.
Verfügbar unter: https://doi.org/10.1099/ijsem.0.003931
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Arn, Fabienne; Frasson, David; Kroslakova, Ivana; Rezzonico, Fabio; Pothier, Joël; Riedl, Rainer; Sievers, Martin,
2020.
Chimia.
74(5), S. 382-390.
Verfügbar unter: https://doi.org/10.2533/chimia.2020.382
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Schneeberger, Pierre H. H.; Fuhrimann, Samuel; Becker, Sören L.; Pothier, Joël F.; Duffy, Brion; Beuret, Christian; Frey, Jürg E.; Utzinger, Jürg,
2019.
Qualitative microbiome profiling along a wastewater system in Kampala, Uganda.
Scientific Reports.
9(1), S. 17334.
Verfügbar unter: https://doi.org/10.1038/s41598-019-53569-5
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Luedin, Samuel M.; Storelli, Nicola; Danza, Francesco; Roman, Samuele; Wittwer, Matthias; Pothier, Joël F.; Tonolla, Mauro,
2019.
Frontiers in Microbiology.
10(384).
Verfügbar unter: https://doi.org/10.3389/fmicb.2019.00384
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Rutz, Dominik; Frasson, David; Sievers, Martin; Blom, Jochen; Rezzonico, Fabio; Pothier, Joël F.; Smits, Theo H.M.,
2019.
Diversity.
2019(11), S. 204.
Verfügbar unter: https://doi.org/10.3390/d11110204
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Ruinelli, Michela; Blom, Jochen; Smits, Theo; Pothier, Joël,
2019.
BMC Genomics.
20(172).
Verfügbar unter: https://doi.org/10.1186/s12864-019-5555-y
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Luedin, Samuel; Liechti, Nicole; Cox, Raymond P.; Danza, Francesco; Frigaard, Niels-Ulrik; Posth, Nicole; Pothier, Joël F.; Roman, Samuele; Storelli, Nicola; Wittwer, Matthias; Tonolla, Mauro,
2019.
Draft genome sequence of Chromatium okenii isolated from the stratified alpine Lake Cadagno.
Scientific Reports.
9(1), S. 1936.
Verfügbar unter: https://doi.org/10.1038/s41598-018-38202-1
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Rutz, Dominik; Frasson, David; Sievers, Martin; Blom, Jochen; Rezzonico, Fabio; Pothier, Joël F.; Smits, Theo H. M.,
2019.
High-quality draft genome sequence of Pseudomonas reidholzensis strain CCOS 865T.
Microbiology Resource Announcements.
8(3).
Verfügbar unter: https://doi.org/10.1128/MRA.01502-18
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Rothen, Julian; Pothier, Joël F.; Foucault, Frédéric; Blom, Jochen; Nanayakkara, Dulmini; Li, Carmen; Ip, Margaret; Tanner, Marcel; Vogel, Guido; Pflüger, Valentin; Daubenberger, Claudia A.,
2019.
Frontiers in Microbiology.
10(471).
Verfügbar unter: https://doi.org/10.3389/fmicb.2019.00471
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Smits, Theo H.M.; Rezzonico, Fabio; Frasson, David; Vesga, Pilar; Vacheron, Jordan; Blom, Jochen; Pothier, Joël F.; Keel, Christoph; Maurhofer, Monika; Sievers, Martin,
2019.
Updated genome sequence and annotation for the full genome of Pseudomonas protegens CHA0.
Microbiology Resource Announcements.
8(39).
Verfügbar unter: https://doi.org/10.1128/MRA.01002-19
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Rutz, Dominik; Frasson, David; Sievers, Martin; Blom, Jochen; Rezzonico, Fabio; Pothier, Joël; Smits, Theo,
2018.
High-quality draft genome sequence of pseudomonas wadenswilerensis CCOS 864T.
Microbiology Resource Announcements.
7(16).
Verfügbar unter: https://doi.org/10.1128/MRA.01059-18
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Fernandes, Camila; Blom, Jochen; Pothier, Joël F.; Tavares, Fernando,
2018.
Microbiology Resource Announcements.
7(16).
Verfügbar unter: https://doi.org/10.1128/MRA.00887-18
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Fernandes, Camila; Blom, Jochen; Pothier, Joël F.; Tavares, Fernando,
2018.
Microbiology Resource Announcements.
7(15).
Verfügbar unter: https://doi.org/10.1128/MRA.00921-18
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Normand, Philippe; Nouioui, Imen; Pujic, Petar; Fournier, Pascale; Dubost, Audrey; Schwob, Guillaume; Klenk, Hans-Peter; Nguyen, Agnès; Abrouk, Danis; Herrera-Belaroussi, Aude; Pothier, Joël F.; Pflüger, Valentin; Fernandez, Maria P.,
2018.
Frankia canadensis sp. nov., isolated from root nodules of Alnus incana subspecies rugosa.
International Journal of Systematic and Evolutionary Microbiology.
68, S. 3001-3011.
Verfügbar unter: https://doi.org/10.1099/ijsem.0.002939
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Luedin, Samuel M.; Pothier, Joël F.; Danza, Francesco; Storelli, Nicola; Frigaard, Niels-Ulrik; Wittwer, Matthias; Tonolla, Mauro,
2018.
Standards in Genomic Sciences.
13(14).
Verfügbar unter: https://doi.org/10.1186/s40793-018-0317-z
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Knecht, Leandra E.; Born, Yannick; Pothier, Joël F.; Loessner, Martin J.; Fieseler, Lars,
2018.
Complete genome sequences of erwinia amylovora phages vB_EamP-S2 and vB_EamM-Bue1.
Microbiology Resource Announcements.
7(3).
Verfügbar unter: https://doi.org/10.1128/MRA.00891-18
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Gétaz, Michael; Krijger, Marjon; Rezzonico, Fabio; Smits, Theo; van der Wolf, Jan M.; Pothier, Joël F.,
2018.
Microbial Genomics.
4(7).
Verfügbar unter: https://doi.org/10.1099/mgen.0.000189
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Gétaz, Michael; Baeyen, Steve; Blom, Jochen; Maes, Martine; Cottyn, Bart; Pothier, Joël F.,
2018.
High-quality draft genome sequences of five xanthomonas arboricola pv. fragariae isolates.
Genome Announcements.
6(7).
Verfügbar unter: https://doi.org/10.1128/genomeA.01585-17
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Rezzonico, Fabio; Duffy, Brion; Smits, Theo H.M.; Pothier, Joël F.,
2017.
Journal of Plant Pathology.
99(Special issue), S. 121-129.
Verfügbar unter: https://doi.org/10.4454/jpp.v99i0.3916
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Gétaz, Michael; Bühlmann, Andreas; Schneeberger, Pierre H. H.; Van Malderghem, Cinzia; Duffy, Brion; Maes, Martine; Pothier, Joël F.; Cottyn, Bart,
2017.
Plant Pathology.
66(7), S. 1094-1102.
Verfügbar unter: https://doi.org/10.1111/ppa.12665
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Kamber, Tim; Pothier, Joël; Pelludat, Cosima; Rezzonico, Fabio; Duffy, Brion; Smits, Theo,
2017.
BMC Genomics.
16(628), S. 1-12.
Verfügbar unter: https://doi.org/10.1186/s12864-017-4010-1
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Gétaz, Michael; van der Wolf, Jan; Blom, Jochen; Pothier, Joël F.,
2017.
Genome Announcements.
5(32).
Verfügbar unter: https://doi.org/10.1128/genomeA.00642-17
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Ruinelli, Michela; Blom, Jochen; Pothier, Joël F.,
2017.
Genome Announcements.
5(30).
Verfügbar unter: https://doi.org/10.1128/genomeA.00662-17
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Rothen, Julian; Schindler, Tobias; Pothier, Joël F.; Younan, Mario; Certa, Ulrich; Daubenberger, Claudia; Pflüger, Valentin; Jores, Joerg,
2017.
Genome Announcements.
5(28).
Verfügbar unter: https://doi.org/10.1128/genomeA.00525-17
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Schneeberger, Pierre H.H.; Pothier, Joël F.; Bühlmann, Andreas; Duffy, Brion; Beuret, Christian; Utzinger, Jürg; Frey, Jürg E.,
2017.
PLOS ONE.
12(5).
Verfügbar unter: https://doi.org/10.1371/journal.pone.0178195
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Kałużna, Monika; Willems, Anne; Pothier, Joël F.; Ruinelli, Michela; Sobiczewski, Piotr; Puławska, Joanna,
2016.
Pseudomonas cerasi sp. nov. (non Griffin, 1911) isolated from diseased tissue of cherry.
Systematic and Applied Microbiology.
39(6), S. 370-377.
Verfügbar unter: https://doi.org/10.1016/j.syapm.2016.05.005
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Ruinelli, Michela; Schneeberger, Pierre H.H; Ferrante, Patrizia; Bühlmann, Andreas; Scortichini, Marco; Vanneste, Joel L.; Duffy, Brion; Pothier, Joël F.,
2016.
Plant Pathology.
66(1), S. 140-149.
Verfügbar unter: https://doi.org/10.1111/ppa.12551
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Schneeberger, Pierre H.H.; Becker, Sören L.; Pothier, Joël F.; Duffy, Brion; N'Goran, Eliézer K.; Beuret, Christian; Frey, Jürg E.; Utzinger, Jürg,
2016.
Infection, Genetics and Evolution.
40, S. 389-397.
Verfügbar unter: https://doi.org/10.1016/j.meegid.2015.08.044
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Puławska, Joanna; Kuzmanović, Nemanja; Willems, Anne; Pothier, Joël F.,
2016.
Pararhizobium polonicum sp. nov. isolated from tumors on stone fruit rootstocks.
Systematic and Applied Microbiology.
39(3), S. 164-169.
Verfügbar unter: https://doi.org/10.1016/j.syapm.2016.03.002
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Kamber, Tim; Buchmann, Jan P.; Pothier, Joël; Smits, Theo; Wicker, Thomas; Duffy, Brion,
2016.
Scientific Reports.
6(21600).
Verfügbar unter: https://doi.org/10.1038/srep21600
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Konavko, Dmitrijs; Malchev, Svetoslav; Pothier, Joël F.; Jundzis, Māris; Moročko-Bičevska, Inga; Rezzonico, Fabio,
2016.
Diversity and host range of Pseudomonas in fruit tree species in Latvia.
Acta Horticulturae.
1149, S. 25-30.
Verfügbar unter: https://doi.org/10.17660/ActaHortic.2016.1149.5
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Smits, Theo H. M.; Pothier, Joël F.; Ruinelli, Michela; Blom, Jochen; Frasson, David; Koechli, Chantal; Fabbri, Carlotta; Brandl, Helmut; Duffy, Brion; Sievers, Martin,
2015.
Genome Announcements.
3(3).
Verfügbar unter: https://doi.org/10.1128/genomeA.00616-15
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Palacio-Bielsa, Ana; López-Soriano, Pablo; Bühlmann, Andreas; van Doorn, Joop; Pham, Khanh; Cambra, Miguel A.; Berruete, Isabel M.; Pothier, Joël F.; Duffy, Brion; Olmos, Antonio; López, María M.,
2015.
Journal of Microbiological Methods.
112, S. 36-39.
Verfügbar unter: https://doi.org/10.1016/j.mimet.2015.03.005
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Ziegler, Dominik; Pothier, Joël F.; Ardley, Julie; Kouakou Fossou, Romain; Pflüger, Valentin; de Meyer, Sofie; Vogel, Guido; Tonolla, Mauro; Howieson, John; Reeve, Wayne; Perret, Xavier,
2015.
Ribosomal protein biomarkers provide root nodule bacterial identification by MALDI-TOF MS.
Applied Microbiology and Biotechnology.
99(13), S. 5547-5562.
Verfügbar unter: https://doi.org/10.1007/s00253-015-6515-3
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Brankatschk, Kerstin; Kamber, Tim; Pothier, Joël F.; Duffy, Brion; Smits, Theo H.M.,
2014.
Microbial Biotechnology.
7(6), S. 528-544.
Verfügbar unter: https://doi.org/10.1111/1751-7915.12104
-
Bühlmann, Andreas; Dreo, Tanja; Rezzonico, Fabio; Pothier, Joël F.; Smits, Theo H. M.; Ravnikar, Maja; Frey, Jürg E.; Duffy, Brion,
2014.
Environmental Microbiology.
16(7), S. 2112-2125.
Verfügbar unter: https://doi.org/10.1111/1462-2920.12289
-
van der Wolf, Jan M.; Nijhuis, Els H.; Kowalewska, Malgorzata J.; Saddler, Gerry S.; Parkinson, Neil; Elphinstone, John G.; Pritchard, Leighton; Toth, Ian K.; Lojkowska, Ewa; Potrykus, Marta; Waleron, Malgorzata; de Vos, Paul; Cleenwerck, Ilse; Pirhonen, Minna; Garlant, Linda; Hélias, Valérie; Pothier, Joël F.; Pflüger, Valentin; Duffy, Brion; Tsror, Leah; Manulis, Shula,
2014.
International Journal of Systematic and Evolutionary Microbiology.
64, S. 768-774.
Verfügbar unter: https://doi.org/10.1099/ijs.0.052944-0
-
Vandroemme, Joachim; Cottyn, Bart; Pothier, Joël F.; Pflüger, Valentin; Duffy, Brion; Maes, Martine,
2013.
Xanthomonas arboricola pv. fragariae : what's in a name?.
Plant Pathology.
62(5), S. 1123-1131.
Verfügbar unter: https://doi.org/10.1111/ppa.12028
-
Socquet-Juglard, Didier; Duffy, Brion; Pothier, Joël F.; Christen, Danilo; Gessler, Cesare; Pattochi, Andrea,
2013.
Identification of a major QTL for Xanthomonas arboricola pv. pruni resistance in apricot.
Tree Genetics & Genomes.
9(2), S. 409-421.
Verfügbar unter: https://doi.org/10.1007/s11295-012-0562-z
-
Bühlmann, Andreas; Pothier, F.; Rezzonico, Fabio; Smits, Theo H. M.; Andreou, Michael; Boonham, Neil; Duffy, Brion; Frey, Jürg E.,
2013.
Journal of Microbiological Methods.
92(3), S. 332-339.
Verfügbar unter: https://doi.org/10.1016/j.mimet.2012.12.017
-
Socquet-Juglard, Didier; Kamber, Tim; Pothier, Joël F.; Christen, Danilo; Gessler, Cesare; Duffy, Brion; Patocchi, Andrea,
2013.
PLOS ONE.
8(1).
Verfügbar unter: https://doi.org/10.1371/journal.pone.0054196
-
Bühlmann, Andreas; Pothier, Joël F.; Tomlinson, Jennifer A.; Frey, Jürg F.; Boonham, N.; Smits, Theo H.M.; Duffy, Brion,
2012.
Plant Pathology.
62(2), S. 475-484.
Verfügbar unter: https://doi.org/10.1111/j.1365-3059.2012.02654.x
-
Kaufmann, Moritz; Schüle, Martin; Smits, Theo; Pothier, Joël,
2020.
Typing plasmids with distributed sequence representation [Paper].
In:
Schilling, Frank-Peter; Stadelmann, Thilo, Hrsg.,
Artificial Neural Networks in Pattern Recognition.
9th IAPR TC 3 Workshop on Artificial Neural Networks for Pattern Recognition (ANNPR'20), Winterthur, Switzerland, 2-4 September 2020.
Cham:
Springer.
S. 200-210.
Lecture Notes in Computer Science ; 12294.
Verfügbar unter: https://doi.org/10.1007/978-3-030-58309-5_16
-
Kałużna, Monika; Willems, Anne; Pothier, Joël F.; Ruinelli, Michela; Sobiczewski, Piotr; Puławska, Joanna,
2016.
In:
II International Workshop on Bacterial Diseases of Stone Fruits and Nuts.
II International Workshop on Bacterial Diseases of Stone Fruits and Nuts, Izmir, Turkey, 21 April 2015.
International Society for Horticultural Science.
S. 9-14.
Verfügbar unter: https://doi.org/10.17660/ActaHortic.2016.1149.2
-
Aspin, Andrew; Cole, Jennifer; Pothier, Joël,
2023.
PM 7/65 (2) Xanthomonas fragariae.
EPPO Bulletin
; 53(2).
Wiley.
Verfügbar unter: https://doi.org/10.1111/epp.12916
-
Costa, Joana; Pothier, Joël F.; Boch, Jens; Stefani, Emilio; Koebnik, Ralf,
2022.
Integrating science on Xanthomonas and Xylella for integrated plant disease management.
Microorganisms.
11(1), S. 6.
Verfügbar unter: https://doi.org/10.3390/microorganisms11010006
-
Costa, Joana; Pothier, Joël F.; Boch, Jens; Stefani, Emilio; Jacques, Marie-Agnès; Catara, Vittoria; Koebnik, Ralf,
2021.
Integrating science on Xanthomonadaceae for sustainable plant disease management in Europe.
Molecular Plant Pathology.
22(12), S. 1461-1463.
Verfügbar unter: https://doi.org/10.1111/mpp.13150
-
Stefani, Emilio; Loreti, Stefania; Costa, Joana; Cunty, Amandine; Pothier, Joël F.,
2021.
PM 7/120 (2) Pseudomonas syringae pv. actinidiae.
EPPO Bulletin
; 51(3).
Wiley.
Verfügbar unter: https://doi.org/10.1111/epp.12782
-
Saponari, Maria; Gétaz, Michael; Palkovics, László; Kuzmanović, Nemanja; Puławska, Joanna; Ruinelli, Michela; Pothier, Joël; Obradović, Aleksa; Boscia, Donato; Végh, Anita; Kałużna, Monika,
2017.
.
In:
Quero-García, José; Iezzoni, Amy; Puławska, Joanna; Lang, Gregory, Hrsg.,
Cherries : botany, production and uses.
Wallingford:
CAB International.
Publikationen vor Tätigkeit an der ZHAW
Cesbron S., Pothier J., Gironde S., Jacques M.-A., Manceau C. (2014). Development of multilocus variable-number tandem repeat analysis (MLVA) for Xanthomonas arboricola pathovars. Journal of Microbiological Methods. 100, 84-90.
Brankatschk K., Kamber T., Pothier J.F., Duffy B., Theo HM Smits T.H.M. (2014). Transcriptional profile of Salmonella enterica subsp. enterica serovar Weltevreden during alfalfa sprout colonization. Microbial biotechnology. 7, 528-544.
Palacio-Bielsa A., Pothier J.F., Roselló M., Duffy B., López M.M. (2012). Xanthomonas arboricola pv. pruni detection and identification methods. Journal of Plant Pathology. 94, S1.135-S1.146.
Campillo T., Lavire C., Malek S., Pothier J.F., Pulawska J. (2012). Tumorigenic Agrobacterium spp. Journal of Plant Pathology. 94, S1.97-S1.104.
Socquet-Juglard D., Patocchi A., Pothier J.F., Christen D., Duffy B. (2012). Evaluation of Xanthomonas arboricola pv. pruni inoculation techniques to screen for bacterial spot resistance in apricot. Journal of Plant Pathology. 94, S1.91-S1.96.
Bergsma-Vlami M., Martin W., Koenraadt H., Teunissen H., Pothier J.F., Duffy B., van Doorn J. (2012). Molecular typing of Dutch isolates of Xanthomonas arboricola pathovar pruni isolated from ornamental cherry laurel. Journal of Plant Pathology. 94, S1.29-S1.35.
Frappoli M.*, Pothier J.F.*, Défago G., Moënne-Loccoz Y. (2012). Evolutionary history of synthesis pathway genes for phloroglucinol and cyanide antimicrobials in plant-associated fluorescent pseudomonads. Molecular Phylogenetics and Evolution. 63, 877-890.
*Contributed equally as first authors
Hajri A., Pothier J.F., Fischer-Le Saux M., Bonneau S., Poussier S., Boureau T., Duffy B., Manceau C. (2012). Type three effector genes distribution and sequence analysis provides new insights into pathogenicity of plant pathogenic Xanthomonas arboricola. Applied and Environmental Microbiology. 78, 371-374.
Pothier J.F., Vorhölter F.-J., Blom J., Goesmann A., Pühler A., Smits T.H.M., Duffy B. (2011). The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis. FEMS Microbiology Letters. 323, 52-60.
Pothier J.F.*, Pagani M.C.*, Pelludat C., Ritchie D.F., Duffy B. (2011). A duplex-PCR method for species- and pathovar-level identification and detection of the quarantine plant pathogen Xanthomonas arboricola pv. pruni. Journal of Microbiological Methods. 86, 16-24.
*Contributed equally as first authors
Combes-Meynet E., Pothier J.F., Moënne-Loccoz Y., Prigent-Combaret C. (2011). The Pseudomonas secondary metabolite 2,4-diacetylphloroglucinol is a signal inducing rhizoplane expression of Azospirillum genes involved in plant-growth promotion. Molecular Plant-Microbe Interactions, 24, 271-284.
Couillerot O., Combes-Meynet E., Pothier J.F., Bellvert F., Challita E., Poirier M.-A., Rohr R., Comte G. Moënne-Loccoz Y., Prigent-Combaret C. (2011). Role of the antimicrobial compound 2,4-diacetylphloroglucinol in the impact of biocontrol Pseudomonas fluorescens F113 on Azospirillum brasilense phytostimulators. Microbiology. 157, 1694-1705.
Pothier J.F., Pelludat C., Bünter M., Genini M., Vogelsanger J., Holliger E., Duffy B. (2010). First report of the quarantine pathogen Xanthomonas arboricola pv. pruni on apricot and plum in Switzerland. Plant Pathology. 59, 404.
Pothier J.F., Prigent-Combaret C., Haurat J., Moënne-Loccoz Y., Wisniewski-Dyé F. (2008). Functional duplication of plasmid-borne nitrite reductase gene nirK in the wheat-associated plant growth-promoting rhizobacterium Azospirillum brasilense Sp245. Molecular Plant-Microbe Interactions. 21, 831-842.
Prigent-Combaret C., Blaha D., Pothier J.F., Poirier M.A., Vial L., Wisniewski F., Bally R., Moënne-Loccoz Y. (2008). Physical organization and phylogenetic analysis of acdR as leucine-responsive regulator of the 1-aminocyclopropane-1-carboxylate (ACC) deaminase gene acdS in phytobeneficial Azospirillum lipoferum 4B and other Proteobacteria. FEMS Microbiology Ecology. 65, 202-219.
Pothier J.F., Prigent-Combaret C., Weiss M., Wisniewski-Dyé F., Moënne-Loccoz Y. (2007). Promoter trap identification of wheat seed extract-induced genes in the plant growth-promoting rhizobacterium Azospirillum brasilense Sp245. Microbiology. 153, 3608-3622.
Vial L., Pothier J.F., Normand P., Moënne-Loccoz Y., Bally R., Wisnievski-Dyé F. (2004). Construction of a recA mutant of Azospirillum lipoferum and involvement of recA in phase variation. FEMS Microbiology Letter. 236, 291-299.
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ORCID ID: orcid.org/0000-0002-9604-7780