Genomik und Transkriptomik von Erwinia und Pantoea
Auf einen Blick
- Projektleiter/in : Dr. Fabio Rezzonico, Dr. Theo Smits
- Projektteam : Dr. Joël Pothier
- Projektstatus : laufend
- Drittmittelgeber : Interne Förderung
- Projektpartner : Justus-Liebig-Universität Giessen, University of the Witwatersrand, University of Pretoria
- Kontaktperson : Theo Smits
Beschreibung
We study the diversity, plasmid diversity and functionality, and evolution of the invasive bacterial pathogen Erwinia amylovora, cause of fire blight disease, and all related Erwinia species. Additionally, we investigate the biocontrol bacteria Pantoea agglomerans and Pantoea vagans using genomics and transcriptomics to elucidate mechanisms of action, increasing biocontrol activity and resolving biosafety concerns with these species. Working with collaborators in South Africa we are investigating the evolutionary genomics of beneficial and pathogenic Pantoea species.
Publikationen
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Sulja, Arburon; Pothier, Joël F.; Blom, Jochen; Moretti, Chiaraluce; Buonaurio, Roberto; Rezzonico, Fabio; Smits, Theo H. M.,
2022.
Comparative genomics to examine the endophytic potential of Pantoea agglomerans DAPP-PG 734.
BMC Genomics.
23(742).
Verfügbar unter: https://doi.org/10.1186/s12864-022-08966-y
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Moretti, Chiaraluce; Rezzonico, Fabio; Orfei, Benedetta; Cortese, Chiara; Moreno‐Pérez, Alba; van den Burg, Harrold A.; Onofri, Andrea; Firrao, Giuseppe; Ramos, Cayo; Smits, Theo H.M.; Buonaurio, Roberto,
2021.
Molecular Plant Pathology.
22(10), S. 1209-1225.
Verfügbar unter: https://doi.org/10.1111/mpp.13105
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Smits, Theo H.M.; Duffy, Brion; Blom, Jochen; Ishimaru, Carol A.; Stockwell, Virginia O.,
2019.
Archives of Microbiology.
201(6), S. 713-722.
Verfügbar unter: https://doi.org/10.1007/s00203-019-01647-7
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Smits, Theo; Duffy, Brion; Sundin, George; Zhao, Youfu; Rezzonico, Fabio,
2017.
Journal of Plant Pathology.
99(Special issue), S. 7-23.
Verfügbar unter: https://doi.org/10.4454/jpp.v99i0.3917
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Rezzonico, Fabio; Duffy, Brion; Smits, Theo H.M.; Pothier, Joël F.,
2017.
Journal of Plant Pathology.
99(Special issue), S. 121-129.
Verfügbar unter: https://doi.org/10.4454/jpp.v99i0.3916
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Ishimaru, Carol; Lansdell, Teresa A.; Clardy, Jon; Duffy, Brion; Smits, Theo H.M.,
2017.
The histidine-reversible antibiotic herbicolin O produced by Pantoea vagans C9-1 is pantocin A.
Journal of Plant Pathology.
99(Special issue), S. 91-97.
Verfügbar unter: https://doi.org/10.4454/jpp.v99i0.3910
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De Maayer, Pieter; Aliyu, Habibu; Vikram, Surendra; Blom, Jochen; Duffy, Brion; Cowan, Don A.; Smits, Theo H.M.; Venter, Stephanus N.; Coutinho, Teresa A.,
2017.
Frontiers in Microbiology.
8, S. 1755.
Verfügbar unter: https://doi.org/10.3389/fmicb.2017.01755
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Kamber, Tim; Pothier, Joël; Pelludat, Cosima; Rezzonico, Fabio; Duffy, Brion; Smits, Theo,
2017.
BMC Genomics.
16(628), S. 1-12.
Verfügbar unter: https://doi.org/10.1186/s12864-017-4010-1
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Palmer, Marike; Steenkamp, Emma T.; Coetzee, Martin P.A.; Chan, Wai-Yin; van Zyl, Elritha; De Maayer, Pieter; Coutinho, Teresa A.; Blom, Jochen; Smits, Theo; Duffy, Brion; Venter, Stephanus N.,
2017.
Antonie van Leeuwenhoek.
110(10), S. 1287-1309.
Verfügbar unter: https://doi.org/10.1007/s10482-017-0852-4
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Rezzonico, Fabio; Smits, Theo; Born, Yannick; Blom, Jochen; Frey, Jürg E.; Goesmann, Alexander; Cleenwerck, Ilse; de Vos, Paul; Bonaterra, Anna; Duffy, Brion; Montesinos, Emilio,
2016.
Erwinia gerundensis sp. nov. : a cosmopolitan epiphyte originally isolated from pome fruit trees.
International Journal of Systematic and Evolutionary Microbiology.
66, S. 1583-1592.
Verfügbar unter: https://doi.org/10.1099/ijsem.0.000920
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Kamber, Tim; Buchmann, Jan P.; Pothier, Joël; Smits, Theo; Wicker, Thomas; Duffy, Brion,
2016.
Scientific Reports.
6(21600).
Verfügbar unter: https://doi.org/10.1038/srep21600
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Smits, Theo H.M.; Rezzonico, Fabio; Blom, Jochen; Goesmann, Alexander; Abelli, Azzurra; Kron Morelli, Roberto; Vanneste, Joël L.; Duffy, Brion,
2015.
Draft genome sequence of the commercial biocontrol strain Pantoea agglomerans P10c.
Genome Announcements.
3(6).
Verfügbar unter: https://doi.org/10.1128/genomeA.01448-15
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De Maayer, Pieter; Chan, Wai-Yin; Martin, Douglas A.; Blom, Jochen; Venter, Stephanus N.; Duffy, Brion; Cowan, Don A.; Smits, Theo H. M.; Coutinho, Teresa A.,
2015.
Frontiers in Microbiology.
6(576).
Verfügbar unter: https://doi.org/10.3389/fmicb.2015.00576
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Ismail, Emadeldeen; Blom, Jochen; Bultreys, Alain; Ivanovic, Milan; Obradovic, Aleksa; van Doorn, Joop; Bergsma-Vlami, Maria; Maes, Martine; Willems, Anne; Duffy, Brion; Stockwell, Virginia O.; Smits, Theo H.M.; Pulawska, Joanna,
2014.
A novel plasmid pEA68 of Erwinia amylovora and the description of a new family of plasmids.
Archives of Microbiology.
196(12), S. 891-899.
Verfügbar unter: https://doi.org/10.1007/s00203-014-1028-5
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Weller-Stuart, Tania; Chan, Wai-Yin; Coutinho, Teresa A.; Venter, Stephanus N.; Smits, Theo H.M.; Duffy, Brion; Goszczynska, Teresa; Cowan, Don A.; de Maayer, Pieter,
2014.
Genome Announcements.
2(4).
Verfügbar unter: https://doi.org/10.1128/genomeA.00750-14
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Rezzonico, Fabio; Smits, Theo H.M.; Holliger, Eduard, Hrsg.,
2014.
Proceedings of the 13th international workshop on fire blight.
13th International Workshop on Fire Blight, Zürich, 2-5 July 2013.
Leuven:
International Society for Horticultural Sciences.
.
ISBN 9789462610460.
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Barbé, Silva; Llop, Pablo; Blom, Jochen; Cabrefiga, Jose; Goesmann, Alexander; Duffy, Brion; Montesinos, E.; Smits, Theo H.M.; López, M. M.,
2013.
Plant Pathology.
62(4), S. 786-798.
Verfügbar unter: https://doi.org/10.1111/ppa.12002
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Mann, Rachel A.; Smits, Theo H.M.; Bühlmann, Andreas; Blom, Jochen; Goesmann, Alexander; Frey, Jürg E.; Plummer, Kim M.; Beer, Steven V.; Luck, Joanne; Duffy, Brion; Rodoni, Brendan,
2013.
PLOS ONE.
8(2).
Verfügbar unter: https://doi.org/10.1371/journal.pone.0055644