Dr. Joël Pothier

Dr. Joël Pothier
ZHAW
School of Life Sciences and Facility Management
Institute of Natural Resource Sciences
Einsiedlerstrasse 29
8820 Wädenswil
Personal profile
Position at the ZHAW
Senior Researcher - Environmental Genomics und Systems Biology Research Group
Expertise and research interests
Microbial Ecology
Biochemistry
Molecular biology
Bioinformatics
Genomics
Transcriptomics
Proteomics
Teaching assistant ("moniteur" and "ATER" University Lyon 1)
Educational background
PhD of Microbial Ecology - 2007 – University Lyon 1 (France)
Master of Science - Year 2: Microbial Ecology - 2003 - University Lyon 1 (France)
Master of Science - Year 1: Molecular and Cellular Biology - 2002 – University of Limoges (France)
Bachelor of Science in Biochemistry - 2001 – University of Limoges (France)
Membership of networks
- Swiss Society for Microbiology SGM-SSM (since 2010)
- Société Française de Phytopathologie SFP (2009-2015)
- Swiss Group for Mass Spectrometry SGMS (since 2015)
- COST 873 (2008-2012)
- COST FA1104 (2013-2016)
- Q-Detect (2010-2013)
- NRP68 (2013-2016)
- Dropsa (2014-2018)
- COST CA16107 (since 2016)
- COST CA16110 (since 2016)
Projects
- Modernes Biodiversitätsmonitoring mit Next-Generation Sequencing (NGS-Methoden) / Team member / Project ongoing
- EBDOmics – Comparative genomics of Enterobacter spp. causing Bulb Decay of Onions / Deputy project leader / Project ongoing
- ChitinOMix – A multidisciplinary project to understand the effect of chitin soil amendment on the plant response, natural microbial community and the fate of human pathogenic bacteria / Project leader / Project ongoing
- Genomics and transcriptomics of Erwinia and Pantoea / Team member / Project ongoing
- Comparative genomics of the plant pathogen Xanthomonas arboricola pv. pruni and related xanthomonads / Project leader / Project ongoing
- MALDI-TOF MS for microorganism identification: from pattern recognition towards marker based approaches / Project leader / Project ongoing
- Fire Blight App for Central Asia / Deputy project leader / Project completed
- Acceptance of an app for contact-tracing of SARS-CoV-2 in the Swiss population / Team member / Project completed
- Silent pathway awakening to discover novel antibacterial compounds from actinomycetes / Project co-leader / Project completed
- MinION2FixID: fast and reliable legume root nodule bacteria identification using nanopore sequencing technology / Project co-leader / Project completed
- XhortOMICs: Diagnostic and epidemiological tools for the Xanthomonas hortorum species-level clade based on OMICs technologies / Project co-leader / Project completed
- Effect of cryopreservation on genome mutation rate - examples of grapevine / Deputy project leader / Project completed
- Development of a fast and exact method for R. solanacearum detection in Swiss surface water samples / Project co-leader / Project completed
- Characterization of nitrogen dynamics in an aquaponic system / Team member / Project completed
- Comparative genomics to untangle insect pathogenicity in plant-associated pseudomonads / Team member / Project completed
- Sepsis-Associated Microorganisms in Brazilian Ambulatories (SAMBA) / Team member / Project completed
- MycoTOF -Determining mycotoxigenic molds and mycotoxins / Project co-leader / Project completed
- COST Action – Sustainable production of high quality cherries for the European market / Project leader / Project completed
- DROPSA – Strategies to develop effective, innovative and practical approaches to protect major European fruit crops from pests and pathogens / Project leader / Project completed
- High-throughput proteomics of Thiodictyon synthrophicum strain Cad16T / Project leader / Project completed
- In-depth molecular analysis of stool and water samples collected in Kampala, Uganda / Project leader / Project completed
Publications
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Li, Leilei; Kaufmann, Moritz; Makechemu, Moffat; Van Poucke, Christof; De Keyser, Ellen; Uyttendaele, Mieke; Zipfel, Cyril; Cottyn, Bart; Pothier, Joël F.,
2023.
Assessment of transcriptional reprogramming of lettuce roots in response to chitin soil amendment.
Frontiers in Plant Science.
14(1158068).
Available from: https://doi.org/10.3389/fpls.2023.1158068
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Arend, Lavinia N.V.S.; Bergamo, Ricardo; Rocha, Fabiano B.; Bail, Larissa; Ito, Carmen; Baura, Valter A.; Balsanelli, Eduardo; Pothier, Joël F.; Rezzonico, Fabio; Pilonetto, Marcelo; Smits, Theo H.M.; Tuon, Felipe Francisco,
2023.
Dissemination of NDM-producing bacteria in Southern Brazil.
Diagnostic Microbiology and Infectious Disease.
106(2), pp. 115930.
Available from: https://doi.org/10.1016/j.diagmicrobio.2023.115930
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Pothier, Joël F.; Bolt, Valentin; Arn, Fabienne; Frasson, David; Rhyner, Nicola; Sievers, Martin,
2023.
Microbiology Resource Announcements.
12(3), pp. e01225-22.
Available from: https://doi.org/10.1128/mra.01225-22
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Sulja, Arburon; Pothier, Joël F.; Blom, Jochen; Moretti, Chiaraluce; Buonaurio, Roberto; Rezzonico, Fabio; Smits, Theo H. M.,
2022.
Comparative genomics to examine the endophytic potential of Pantoea agglomerans DAPP-PG 734.
BMC Genomics.
23(742).
Available from: https://doi.org/10.1186/s12864-022-08966-y
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Schmautz, Zala; Walser, Jean-Claude; Espinal, Carlos A.; Gartmann, Florentina; Scott, Benjamin; Pothier, Joël F.; Frossard, Emmanuel; Junge, Ranka; Smits, Theo H. M.,
2022.
Science of the Total Environment.
852(158426).
Available from: https://doi.org/10.1016/j.scitotenv.2022.158426
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Dia, Nay C.; Cottyn, Bart; Blom, Jochen; Smits, Theo H. M.; Pothier, Joël F.,
2022.
Frontiers in Agronomy.
4(898778).
Available from: https://doi.org/10.3389/fagro.2022.898778
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Silva, Kayla Gisela; Martins, Leonor; Teixeira, Miguel; Pothier, Joël F.; Tavares, Fernando,
2022.
DNA markers for detection and genotyping of Xanthomonas euroxanthea.
Microorganisms.
10(6), pp. 1078.
Available from: https://doi.org/10.3390/microorganisms10061078
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Kałużna, Monika; Pothier, Joël F.,
2022.
Phytopathology.
112(8), pp. 1814-1818.
Available from: https://doi.org/10.1094/PHYTO-11-21-0484-A
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Ruinelli, Michela; Blom, Jochen; Smits, Theo H. M.; Pothier, Joël F.,
2022.
Frontiers in Microbiology.
13(804681).
Available from: https://doi.org/10.3389/fmicb.2022.804681
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Dia, Nay C.; Morinière, Lucas; Cottyn, Bart; Bernal, Eduardo; Jacobs, Jonathan M.; Koebnik, Ralf; Osdaghi, Ebrahim; Potnis, Neha; Pothier, Joël F.,
2022.
Xanthomonas hortorum – beyond gardens : current taxonomy, genomics, and virulence repertoires.
Molecular Plant Pathology.
23(5), pp. 597-621.
Available from: https://doi.org/10.1111/mpp.13185
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Hakalová, Eliška; Čechová, Jana; Tekielska, Dorota A.; Eichmeier, Ales; Pothier, Joël F.,
2022.
Frontiers in Microbiology.
13.
Available from: https://doi.org/10.3389/fmicb.2022.1007988
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Knecht, Leandra E.; Born, Yannick; Pelludat, Cosima; Pothier, Joël F.; Smits, Theo H. M.; Loessner, Martin J.; Fieseler, Lars,
2022.
Frontiers in Microbiology.
13(908346).
Available from: https://doi.org/10.3389/fmicb.2022.908346
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Dia, Nay C.; Van Vaerenbergh, Johan; Van Malderghem, Cinzia; Blom, Jochen; Smits, Theo H. M.; Cottyn, Bart; Pothier, Joël F.,
2021.
Xanthomonas hydrangeae sp. nov., a novel plant pathogen isolated from Hydrangea arborescens.
International Journal of Systematic and Evolutionary Microbiology.
71(12).
Available from: https://doi.org/10.1099/ijsem.0.005163
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Kałużna, Monika; Fischer‐Le Saux, Marion; Pothier, Joël; Jacques, Marie‐Agnès; Obradović, Aleksa; Tavares, Fernando; Stefani, Emilio,
2021.
Molecular Plant Pathology.
22(12), pp. 1481-1499.
Available from: https://doi.org/10.1111/mpp.13073
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Cottyn, B.; De Paepe, B.; Dia, Nay; Van Malderghem, C.; Pothier, Joël; Van Vaerenbergh, J.,
2021.
New Disease Reports.
43(2), pp. e12008.
Available from: https://doi.org/10.1002/ndr2.12008
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Catara, Vittoria; Cubero, Jaime; Pothier, Joël; Bosis, Eran; Bragard, Claude; Đermić, Edyta; Holeva, Maria C.; Jacques, Marie-Agnès; Petter, Francoise; Pruvost, Olivier; Robène, Isabelle; Studholme, David J.; Tavares, Fernando; Vicente, Joana G.; Koebnik, Ralf; Costa, Joana,
2021.
Trends in molecular diagnosis and diversity studies for phytosanitary regulated Xanthomonas.
Microorganisms.
9(4), pp. 862.
Available from: https://doi.org/10.3390/microorganisms9040862
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Fernandes, Camila; Martins, Leonor; Teixeira, Miguel; Blom, Jochen; Pothier, Joël; Fonseca, Nuno A.; Tavares, Fernando,
2021.
Microorganisms.
9(3), pp. 624.
Available from: https://doi.org/10.3390/microorganisms9030624
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Pothier, Joël F.; Kałużna, Monika; Prokić, Andjelka; Obradovic, Aleksa; Rezzonico, Fabio,
2021.
Phytopathology.
112(4), pp. 956-960.
Available from: https://doi.org/10.1094/PHYTO-08-21-0356-A
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Puławska, Joanna; Kałużna, Monika; Warabieda, Wojciech; Pothier, Joël F.; Gétaz, Michael; van der Wolf, Jan M.,
2020.
Transcriptome analysis of Xanthomonas fragariae in strawberry leaves.
Scientific Reports.
10(20582).
Available from: https://doi.org/10.1038/s41598-020-77612-y
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Dia, Nay C.; Rezzonico, Fabio; Smits, Theo H. M.; Pothier, Joël F.,
2020.
Microbiology Resource Announcements.
9(41), pp. e00828-20.
Available from: https://doi.org/10.1128/MRA.00828-20
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Martins, Leonor; Fernandes, Camila; Blom, Jochen; Dia, Nay C.; Pothier, Joël F.; Tavares, Fernando,
2020.
International Journal of Systematic and Evolutionary Microbiology.
70(12), pp. 6024-6031.
Available from: https://doi.org/10.1099/ijsem.0.004386
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Gétaz, Michael; Puławska, Joanna; Smits, Theo H.M.; Pothier, Joël F.,
2020.
Microorganisms.
8(8), pp. 1253.
Available from: https://doi.org/10.3390/microorganisms8081253
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Gétaz, Michael; Blom, Jochen; Smits, Theo H. M.; Pothier, Joël F.,
2020.
Phytopathology Research.
2020(2), pp. 17.
Available from: https://doi.org/10.1186/s42483-020-00061-y
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Rothen, Julian; Sapugahawatte, Dulmini Nanayakkara; Li, Carmen; Lo, Norman; Vogel, Guido; Foucault, Frédéric; Pflüger, Valentin; Pothier, Joël; Blom, Jochen; Daubenberger, Claudia; Ip, Margaret,
2020.
Scientific Reports.
10(8788).
Available from: https://doi.org/10.1038/s41598-020-65707-5
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Fossou, Romain K.; Pothier, Joël F.; Zézé, Adolphe; Perret, Xavier,
2020.
International Journal of Systematic and Evolutionary Microbiology.
70(2), pp. 1421-1430.
Available from: https://doi.org/10.1099/ijsem.0.003931
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Arn, Fabienne; Frasson, David; Kroslakova, Ivana; Rezzonico, Fabio; Pothier, Joël; Riedl, Rainer; Sievers, Martin,
2020.
Chimia.
74(5), pp. 382-390.
Available from: https://doi.org/10.2533/chimia.2020.382
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Schneeberger, Pierre H. H.; Fuhrimann, Samuel; Becker, Sören L.; Pothier, Joël F.; Duffy, Brion; Beuret, Christian; Frey, Jürg E.; Utzinger, Jürg,
2019.
Qualitative microbiome profiling along a wastewater system in Kampala, Uganda.
Scientific Reports.
9(1), pp. 17334.
Available from: https://doi.org/10.1038/s41598-019-53569-5
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Luedin, Samuel M.; Storelli, Nicola; Danza, Francesco; Roman, Samuele; Wittwer, Matthias; Pothier, Joël F.; Tonolla, Mauro,
2019.
Frontiers in Microbiology.
10(384).
Available from: https://doi.org/10.3389/fmicb.2019.00384
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Rutz, Dominik; Frasson, David; Sievers, Martin; Blom, Jochen; Rezzonico, Fabio; Pothier, Joël F.; Smits, Theo H.M.,
2019.
Diversity.
2019(11), pp. 204.
Available from: https://doi.org/10.3390/d11110204
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Ruinelli, Michela; Blom, Jochen; Smits, Theo; Pothier, Joël,
2019.
BMC Genomics.
20(172).
Available from: https://doi.org/10.1186/s12864-019-5555-y
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Luedin, Samuel; Liechti, Nicole; Cox, Raymond P.; Danza, Francesco; Frigaard, Niels-Ulrik; Posth, Nicole; Pothier, Joël F.; Roman, Samuele; Storelli, Nicola; Wittwer, Matthias; Tonolla, Mauro,
2019.
Draft genome sequence of Chromatium okenii isolated from the stratified alpine Lake Cadagno.
Scientific Reports.
9(1), pp. 1936.
Available from: https://doi.org/10.1038/s41598-018-38202-1
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Rutz, Dominik; Frasson, David; Sievers, Martin; Blom, Jochen; Rezzonico, Fabio; Pothier, Joël F.; Smits, Theo H. M.,
2019.
High-quality draft genome sequence of Pseudomonas reidholzensis strain CCOS 865T.
Microbiology Resource Announcements.
8(3).
Available from: https://doi.org/10.1128/MRA.01502-18
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Rothen, Julian; Pothier, Joël F.; Foucault, Frédéric; Blom, Jochen; Nanayakkara, Dulmini; Li, Carmen; Ip, Margaret; Tanner, Marcel; Vogel, Guido; Pflüger, Valentin; Daubenberger, Claudia A.,
2019.
Frontiers in Microbiology.
10(471).
Available from: https://doi.org/10.3389/fmicb.2019.00471
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Smits, Theo H.M.; Rezzonico, Fabio; Frasson, David; Vesga, Pilar; Vacheron, Jordan; Blom, Jochen; Pothier, Joël F.; Keel, Christoph; Maurhofer, Monika; Sievers, Martin,
2019.
Updated genome sequence and annotation for the full genome of Pseudomonas protegens CHA0.
Microbiology Resource Announcements.
8(39).
Available from: https://doi.org/10.1128/MRA.01002-19
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Rutz, Dominik; Frasson, David; Sievers, Martin; Blom, Jochen; Rezzonico, Fabio; Pothier, Joël; Smits, Theo,
2018.
High-quality draft genome sequence of pseudomonas wadenswilerensis CCOS 864T.
Microbiology Resource Announcements.
7(16).
Available from: https://doi.org/10.1128/MRA.01059-18
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Fernandes, Camila; Blom, Jochen; Pothier, Joël F.; Tavares, Fernando,
2018.
Microbiology Resource Announcements.
7(16).
Available from: https://doi.org/10.1128/MRA.00887-18
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Fernandes, Camila; Blom, Jochen; Pothier, Joël F.; Tavares, Fernando,
2018.
Microbiology Resource Announcements.
7(15).
Available from: https://doi.org/10.1128/MRA.00921-18
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Normand, Philippe; Nouioui, Imen; Pujic, Petar; Fournier, Pascale; Dubost, Audrey; Schwob, Guillaume; Klenk, Hans-Peter; Nguyen, Agnès; Abrouk, Danis; Herrera-Belaroussi, Aude; Pothier, Joël F.; Pflüger, Valentin; Fernandez, Maria P.,
2018.
Frankia canadensis sp. nov., isolated from root nodules of Alnus incana subspecies rugosa.
International Journal of Systematic and Evolutionary Microbiology.
68, pp. 3001-3011.
Available from: https://doi.org/10.1099/ijsem.0.002939
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Luedin, Samuel M.; Pothier, Joël F.; Danza, Francesco; Storelli, Nicola; Frigaard, Niels-Ulrik; Wittwer, Matthias; Tonolla, Mauro,
2018.
Standards in Genomic Sciences.
13(14).
Available from: https://doi.org/10.1186/s40793-018-0317-z
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Knecht, Leandra E.; Born, Yannick; Pothier, Joël F.; Loessner, Martin J.; Fieseler, Lars,
2018.
Complete genome sequences of erwinia amylovora phages vB_EamP-S2 and vB_EamM-Bue1.
Microbiology Resource Announcements.
7(3).
Available from: https://doi.org/10.1128/MRA.00891-18
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Gétaz, Michael; Krijger, Marjon; Rezzonico, Fabio; Smits, Theo; van der Wolf, Jan M.; Pothier, Joël F.,
2018.
Microbial Genomics.
4(7).
Available from: https://doi.org/10.1099/mgen.0.000189
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Gétaz, Michael; Baeyen, Steve; Blom, Jochen; Maes, Martine; Cottyn, Bart; Pothier, Joël F.,
2018.
High-quality draft genome sequences of five xanthomonas arboricola pv. fragariae isolates.
Genome Announcements.
6(7).
Available from: https://doi.org/10.1128/genomeA.01585-17
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Rezzonico, Fabio; Duffy, Brion; Smits, Theo H.M.; Pothier, Joël F.,
2017.
Journal of Plant Pathology.
99(Special issue), pp. 121-129.
Available from: https://doi.org/10.4454/jpp.v99i0.3916
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Gétaz, Michael; Bühlmann, Andreas; Schneeberger, Pierre H. H.; Van Malderghem, Cinzia; Duffy, Brion; Maes, Martine; Pothier, Joël F.; Cottyn, Bart,
2017.
Plant Pathology.
66(7), pp. 1094-1102.
Available from: https://doi.org/10.1111/ppa.12665
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Kamber, Tim; Pothier, Joël; Pelludat, Cosima; Rezzonico, Fabio; Duffy, Brion; Smits, Theo,
2017.
BMC Genomics.
16(628), pp. 1-12.
Available from: https://doi.org/10.1186/s12864-017-4010-1
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Gétaz, Michael; van der Wolf, Jan; Blom, Jochen; Pothier, Joël F.,
2017.
Genome Announcements.
5(32).
Available from: https://doi.org/10.1128/genomeA.00642-17
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Ruinelli, Michela; Blom, Jochen; Pothier, Joël F.,
2017.
Genome Announcements.
5(30).
Available from: https://doi.org/10.1128/genomeA.00662-17
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Rothen, Julian; Schindler, Tobias; Pothier, Joël F.; Younan, Mario; Certa, Ulrich; Daubenberger, Claudia; Pflüger, Valentin; Jores, Joerg,
2017.
Genome Announcements.
5(28).
Available from: https://doi.org/10.1128/genomeA.00525-17
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Schneeberger, Pierre H.H.; Pothier, Joël F.; Bühlmann, Andreas; Duffy, Brion; Beuret, Christian; Utzinger, Jürg; Frey, Jürg E.,
2017.
PLOS ONE.
12(5).
Available from: https://doi.org/10.1371/journal.pone.0178195
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Kałużna, Monika; Willems, Anne; Pothier, Joël F.; Ruinelli, Michela; Sobiczewski, Piotr; Puławska, Joanna,
2016.
Pseudomonas cerasi sp. nov. (non Griffin, 1911) isolated from diseased tissue of cherry.
Systematic and Applied Microbiology.
39(6), pp. 370-377.
Available from: https://doi.org/10.1016/j.syapm.2016.05.005
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Ruinelli, Michela; Schneeberger, Pierre H.H; Ferrante, Patrizia; Bühlmann, Andreas; Scortichini, Marco; Vanneste, Joel L.; Duffy, Brion; Pothier, Joël F.,
2016.
Plant Pathology.
66(1), pp. 140-149.
Available from: https://doi.org/10.1111/ppa.12551
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Schneeberger, Pierre H.H.; Becker, Sören L.; Pothier, Joël F.; Duffy, Brion; N'Goran, Eliézer K.; Beuret, Christian; Frey, Jürg E.; Utzinger, Jürg,
2016.
Infection, Genetics and Evolution.
40, pp. 389-397.
Available from: https://doi.org/10.1016/j.meegid.2015.08.044
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Puławska, Joanna; Kuzmanović, Nemanja; Willems, Anne; Pothier, Joël F.,
2016.
Pararhizobium polonicum sp. nov. isolated from tumors on stone fruit rootstocks.
Systematic and Applied Microbiology.
39(3), pp. 164-169.
Available from: https://doi.org/10.1016/j.syapm.2016.03.002
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Kamber, Tim; Buchmann, Jan P.; Pothier, Joël; Smits, Theo; Wicker, Thomas; Duffy, Brion,
2016.
Scientific Reports.
6(21600).
Available from: https://doi.org/10.1038/srep21600
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Konavko, Dmitrijs; Malchev, Svetoslav; Pothier, Joël F.; Jundzis, Māris; Moročko-Bičevska, Inga; Rezzonico, Fabio,
2016.
Diversity and host range of Pseudomonas in fruit tree species in Latvia.
Acta Horticulturae.
1149, pp. 25-30.
Available from: https://doi.org/10.17660/ActaHortic.2016.1149.5
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Smits, Theo H. M.; Pothier, Joël F.; Ruinelli, Michela; Blom, Jochen; Frasson, David; Koechli, Chantal; Fabbri, Carlotta; Brandl, Helmut; Duffy, Brion; Sievers, Martin,
2015.
Genome Announcements.
3(3).
Available from: https://doi.org/10.1128/genomeA.00616-15
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Palacio-Bielsa, Ana; López-Soriano, Pablo; Bühlmann, Andreas; van Doorn, Joop; Pham, Khanh; Cambra, Miguel A.; Berruete, Isabel M.; Pothier, Joël F.; Duffy, Brion; Olmos, Antonio; López, María M.,
2015.
Journal of Microbiological Methods.
112, pp. 36-39.
Available from: https://doi.org/10.1016/j.mimet.2015.03.005
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Ziegler, Dominik; Pothier, Joël F.; Ardley, Julie; Kouakou Fossou, Romain; Pflüger, Valentin; de Meyer, Sofie; Vogel, Guido; Tonolla, Mauro; Howieson, John; Reeve, Wayne; Perret, Xavier,
2015.
Ribosomal protein biomarkers provide root nodule bacterial identification by MALDI-TOF MS.
Applied Microbiology and Biotechnology.
99(13), pp. 5547-5562.
Available from: https://doi.org/10.1007/s00253-015-6515-3
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Brankatschk, Kerstin; Kamber, Tim; Pothier, Joël F.; Duffy, Brion; Smits, Theo H.M.,
2014.
Microbial Biotechnology.
7(6), pp. 528-544.
Available from: https://doi.org/10.1111/1751-7915.12104
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Bühlmann, Andreas; Dreo, Tanja; Rezzonico, Fabio; Pothier, Joël F.; Smits, Theo H. M.; Ravnikar, Maja; Frey, Jürg E.; Duffy, Brion,
2014.
Environmental Microbiology.
16(7), pp. 2112-2125.
Available from: https://doi.org/10.1111/1462-2920.12289
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van der Wolf, Jan M.; Nijhuis, Els H.; Kowalewska, Malgorzata J.; Saddler, Gerry S.; Parkinson, Neil; Elphinstone, John G.; Pritchard, Leighton; Toth, Ian K.; Lojkowska, Ewa; Potrykus, Marta; Waleron, Malgorzata; de Vos, Paul; Cleenwerck, Ilse; Pirhonen, Minna; Garlant, Linda; Hélias, Valérie; Pothier, Joël F.; Pflüger, Valentin; Duffy, Brion; Tsror, Leah; Manulis, Shula,
2014.
International Journal of Systematic and Evolutionary Microbiology.
64, pp. 768-774.
Available from: https://doi.org/10.1099/ijs.0.052944-0
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Vandroemme, Joachim; Cottyn, Bart; Pothier, Joël F.; Pflüger, Valentin; Duffy, Brion; Maes, Martine,
2013.
Xanthomonas arboricola pv. fragariae : what's in a name?.
Plant Pathology.
62(5), pp. 1123-1131.
Available from: https://doi.org/10.1111/ppa.12028
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Socquet-Juglard, Didier; Duffy, Brion; Pothier, Joël F.; Christen, Danilo; Gessler, Cesare; Pattochi, Andrea,
2013.
Identification of a major QTL for Xanthomonas arboricola pv. pruni resistance in apricot.
Tree Genetics & Genomes.
9(2), pp. 409-421.
Available from: https://doi.org/10.1007/s11295-012-0562-z
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Bühlmann, Andreas; Pothier, F.; Rezzonico, Fabio; Smits, Theo H. M.; Andreou, Michael; Boonham, Neil; Duffy, Brion; Frey, Jürg E.,
2013.
Journal of Microbiological Methods.
92(3), pp. 332-339.
Available from: https://doi.org/10.1016/j.mimet.2012.12.017
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Socquet-Juglard, Didier; Kamber, Tim; Pothier, Joël F.; Christen, Danilo; Gessler, Cesare; Duffy, Brion; Patocchi, Andrea,
2013.
PLOS ONE.
8(1).
Available from: https://doi.org/10.1371/journal.pone.0054196
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Bühlmann, Andreas; Pothier, Joël F.; Tomlinson, Jennifer A.; Frey, Jürg F.; Boonham, N.; Smits, Theo H.M.; Duffy, Brion,
2012.
Plant Pathology.
62(2), pp. 475-484.
Available from: https://doi.org/10.1111/j.1365-3059.2012.02654.x
-
Kaufmann, Moritz; Schüle, Martin; Smits, Theo; Pothier, Joël,
2020.
Typing plasmids with distributed sequence representation [paper].
In:
Schilling, Frank-Peter; Stadelmann, Thilo, eds.,
Artificial Neural Networks in Pattern Recognition.
9th IAPR TC 3 Workshop on Artificial Neural Networks for Pattern Recognition (ANNPR'20), Winterthur, Switzerland, 2-4 September 2020.
Cham:
Springer.
pp. 200-210.
Lecture Notes in Computer Science ; 12294.
Available from: https://doi.org/10.1007/978-3-030-58309-5_16
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Kałużna, Monika; Willems, Anne; Pothier, Joël F.; Ruinelli, Michela; Sobiczewski, Piotr; Puławska, Joanna,
2016.
In:
II International Workshop on Bacterial Diseases of Stone Fruits and Nuts.
II International Workshop on Bacterial Diseases of Stone Fruits and Nuts, Izmir, Turkey, 21 April 2015.
International Society for Horticultural Science.
pp. 9-14.
Available from: https://doi.org/10.17660/ActaHortic.2016.1149.2
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Costa, Joana; Pothier, Joël F.; Boch, Jens; Stefani, Emilio; Koebnik, Ralf,
2022.
Integrating science on Xanthomonas and Xylella for integrated plant disease management.
Microorganisms.
11(1), pp. 6.
Available from: https://doi.org/10.3390/microorganisms11010006
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Costa, Joana; Pothier, Joël F.; Boch, Jens; Stefani, Emilio; Jacques, Marie-Agnès; Catara, Vittoria; Koebnik, Ralf,
2021.
Integrating science on Xanthomonadaceae for sustainable plant disease management in Europe.
Molecular Plant Pathology.
22(12), pp. 1461-1463.
Available from: https://doi.org/10.1111/mpp.13150
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Stefani, Emilio; Loreti, Stefania; Costa, Joana; Cunty, Amandine; Pothier, Joël F.,
2021.
PM 7/120 (2) Pseudomonas syringae pv. actinidiae.
EPPO Bulletin
.
Wiley.
Available from: https://doi.org/10.1111/epp.12782
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Saponari, Maria; Gétaz, Michael; Palkovics, László; Kuzmanović, Nemanja; Puławska, Joanna; Ruinelli, Michela; Pothier, Joël; Obradović, Aleksa; Boscia, Donato; Végh, Anita; Kałużna, Monika,
2017.
.
In:
Quero-García, José; Iezzoni, Amy; Puławska, Joanna; Lang, Gregory, eds.,
Cherries : botany, production and uses.
Wallingford:
CAB International.
Publications before appointment at the ZHAW
Cesbron S., Pothier J., Gironde S., Jacques M.-A., Manceau C. (2014). Development of multilocus variable-number tandem repeat analysis (MLVA) for Xanthomonas arboricola pathovars. Journal of Microbiological Methods. 100, 84-90.
Brankatschk K., Kamber T., Pothier J.F., Duffy B., Theo HM Smits T.H.M. (2014). Transcriptional profile of Salmonella enterica subsp. enterica serovar Weltevreden during alfalfa sprout colonization. Microbial biotechnology. 7, 528-544.
Palacio-Bielsa A., Pothier J.F., Roselló M., Duffy B., López M.M. (2012). Xanthomonas arboricola pv. pruni detection and identification methods. Journal of Plant Pathology. 94, S1.135-S1.146.
Campillo T., Lavire C., Malek S., Pothier J.F., Pulawska J. (2012). Tumorigenic Agrobacterium spp. Journal of Plant Pathology. 94, S1.97-S1.104.
Socquet-Juglard D., Patocchi A., Pothier J.F., Christen D., Duffy B. (2012). Evaluation of Xanthomonas arboricola pv. pruni inoculation techniques to screen for bacterial spot resistance in apricot. Journal of Plant Pathology. 94, S1.91-S1.96.
Bergsma-Vlami M., Martin W., Koenraadt H., Teunissen H., Pothier J.F., Duffy B., van Doorn J. (2012). Molecular typing of Dutch isolates of Xanthomonas arboricola pathovar pruni isolated from ornamental cherry laurel. Journal of Plant Pathology. 94, S1.29-S1.35.
Frappoli M.*, Pothier J.F.*, Défago G., Moënne-Loccoz Y. (2012). Evolutionary history of synthesis pathway genes for phloroglucinol and cyanide antimicrobials in plant-associated fluorescent pseudomonads. Molecular Phylogenetics and Evolution. 63, 877-890.
*Contributed equally as first authors
Hajri A., Pothier J.F., Fischer-Le Saux M., Bonneau S., Poussier S., Boureau T., Duffy B., Manceau C. (2012). Type three effector genes distribution and sequence analysis provides new insights into pathogenicity of plant pathogenic Xanthomonas arboricola. Applied and Environmental Microbiology. 78, 371-374.
Pothier J.F., Vorhölter F.-J., Blom J., Goesmann A., Pühler A., Smits T.H.M., Duffy B. (2011). The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis. FEMS Microbiology Letters. 323, 52-60.
Pothier J.F.*, Pagani M.C.*, Pelludat C., Ritchie D.F., Duffy B. (2011). A duplex-PCR method for species- and pathovar-level identification and detection of the quarantine plant pathogen Xanthomonas arboricola pv. pruni. Journal of Microbiological Methods. 86, 16-24.
*Contributed equally as first authors
Combes-Meynet E., Pothier J.F., Moënne-Loccoz Y., Prigent-Combaret C. (2011). The Pseudomonas secondary metabolite 2,4-diacetylphloroglucinol is a signal inducing rhizoplane expression of Azospirillum genes involved in plant-growth promotion. Molecular Plant-Microbe Interactions, 24, 271-284.
Couillerot O., Combes-Meynet E., Pothier J.F., Bellvert F., Challita E., Poirier M.-A., Rohr R., Comte G. Moënne-Loccoz Y., Prigent-Combaret C. (2011). Role of the antimicrobial compound 2,4-diacetylphloroglucinol in the impact of biocontrol Pseudomonas fluorescens F113 on Azospirillum brasilense phytostimulators. Microbiology. 157, 1694-1705.
Pothier J.F., Pelludat C., Bünter M., Genini M., Vogelsanger J., Holliger E., Duffy B. (2010). First report of the quarantine pathogen Xanthomonas arboricola pv. pruni on apricot and plum in Switzerland. Plant Pathology. 59, 404.
Pothier J.F., Prigent-Combaret C., Haurat J., Moënne-Loccoz Y., Wisniewski-Dyé F. (2008). Functional duplication of plasmid-borne nitrite reductase gene nirK in the wheat-associated plant growth-promoting rhizobacterium Azospirillum brasilense Sp245. Molecular Plant-Microbe Interactions. 21, 831-842.
Prigent-Combaret C., Blaha D., Pothier J.F., Poirier M.A., Vial L., Wisniewski F., Bally R., Moënne-Loccoz Y. (2008). Physical organization and phylogenetic analysis of acdR as leucine-responsive regulator of the 1-aminocyclopropane-1-carboxylate (ACC) deaminase gene acdS in phytobeneficial Azospirillum lipoferum 4B and other Proteobacteria. FEMS Microbiology Ecology. 65, 202-219.
Pothier J.F., Prigent-Combaret C., Weiss M., Wisniewski-Dyé F., Moënne-Loccoz Y. (2007). Promoter trap identification of wheat seed extract-induced genes in the plant growth-promoting rhizobacterium Azospirillum brasilense Sp245. Microbiology. 153, 3608-3622.
Vial L., Pothier J.F., Normand P., Moënne-Loccoz Y., Bally R., Wisnievski-Dyé F. (2004). Construction of a recA mutant of Azospirillum lipoferum and involvement of recA in phase variation. FEMS Microbiology Letter. 236, 291-299.
Other publications
ORCID ID: orcid.org/0000-0002-9604-7780