Publications

Institute of Applied Simulation

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Measuring the Perceived Morphological Complexity of Intracranial Aneurysms

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In: 3rd International SystemsX.ch Conference. Zürich: SystemsX.ch.

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PHASES Score for the Management of Intracranial Aneurysm

: A Cross-Sectional Population-Based Retrospective Study.

Stroke, 48, 8. 2105-2112. Peer reviewed.

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The Future's Back - First Generic Models of Forecasting-Based Traffic Management

: Conference Talk.

In: NDES 2017. Zernez, Switzerland: .. Peer reviewed.

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Using Shape Descriptors to Categorize Intracranial Aneurysms

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In: CMBE 2017. 5th International Conference on Computational and Mathematical Biomedical Engineering. Pittsburgh, USA: CMBE. Peer reviewed.

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Where does CFD Identify Lesion Instability in Small Aneurysms?

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In: CMBE2017. 5th International Conference on Computational and Mathematical Biomedical Engineering. Pittsburgh, USA: CMBE. Peer reviewed.

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(Machine × Human Learning)^n – Partners Learning Together

: Keynote.

In: CEBIT 2016. Swiss Pavilion Arena. Hannover: CEBIT.

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As a stone thrown in a still pond: Predicting human influenza epidemiological dynamics after 2009 A/pH1N1 pandemic explosion

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In: ZHAW Forum Health & Life Sciences 2016. Wädenswil, ZH: ZHAW.

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Clustered Multidimensional Scaling with Rulkov Neurons

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Proceedings of NOLTA (International Symposium of Nonlinear Theory and Its Applications) 389-392. Peer reviewed.

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DNA polymorphism and selection at the bindin locus in three Strongylocentrotus sp.(Echinoidea)

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BMC genetics, 17, 1. Peer reviewed.

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EpiTools: An Open-Source Image Analysis Toolkit for Quantifying Epithelial Growth Dynamics

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Developmental Cell, Elsevier, 36, 1. 103/116. Peer reviewed.

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European Government Bond Dynamics and Stability Policies: Taming Contagion Risks

: Kongressvortrag.

In: 9th Financial Risks Internation Forum. Kongress. (21.3.2016). Paris: Louis Bachelier Institut . Peer reviewed.

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Evolution from mathematician to bioinformatician by natural selection

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In: POST-DOC-DOC 2.0. Life Sciences. Schloss Au, Wädenswil: UZH.

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Evolution of protein tandem repeats

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In: Virtual Computational Biology Seminar Series. Lausanne: SIB.

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Forecasting Correlation Structures

: Kongressvortrag.

In: 2016 International Symposium on Nonlinear Theory and Its Applications. Kongress. (27.11.2016). Yugawara, Japan: International Symposium on Nonlinear Theory and Its Applications. Peer reviewed.

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Humans and Algorithms: Creation and Measurement of Economic Value in Demand Forecasting

: Conference talk.

In: The 3rd Swiss Conference on Data Science (SDS|2016). Conference. (16th of September, 2016). Winterthur: Datalab, SAP . Peer reviewed.

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Impact of spinal versus general anesthesia on postoperative pain and long term recurrence after surgery for pilonidal disease

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Journal of Clinical Anesthesia, 33 236-242. Peer reviewed.

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Implications of Patient Age and ASA Physical Status for Operating Room Management Decisions

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Anaesthesia & Analgesia, in publication Peer reviewed.

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Kooperieren? Ja! Aber wie?

: Chancen und Herausforderungen bei der Entwicklung einer Kooperationsplattform für urbane Güterlogistik in der Stadt Zürich.

Logistics Innovation, 1 18-21.

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Mit Advanced Dynamic Planning Energiebedarf, Betriebskosten und Investitionsrisiken reduzieren - am Beispiel von Lackieranlagen

: Tagungsreferart.

In: 16. Thurgauer Technologietag: Digitalisierung. Tagung. (18. März 2016). Kreuzlingen: Thurgauer Technologieforum.

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On the Nature of Computation

: Seminarvortrag.

In: Séminaire d'Histoire et Philosophie de l'Informatique. Seminar. (14.4.2016). Paris: IHPST Paris.

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Online Vorkurs Mathematik

: Tagungsreferat.

In: Teach&Snow Days. Klausurtagung. (19. Januar 2016). Wergenstein (GR): IUNR, ZHAW.

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Shape-based assessment of intracranial aneurysm disease status

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In: ZNZ Symposium 2016. Zürich: Neuroscience Center Zurich.

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Shape-based assessment of intracranial aneurysm disease status – a machine learning approach

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In: All SystemsX Day. Poster Presentations. Bern: SystemsX.ch.

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Shape-based modeling of aneurysmal disease status

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In: ECCOMAS 2016. Minisimposium on Aneurysms: Solid Mechanics, fluid mechanics and mechanobiology. Heraklion, Greece: ECCOMAS. Peer reviewed.

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Shape? Shape. Shape!

: ON THE ANEUX PROJECT – MODELLING SHAPE AS A BIOMARKER FOR INSTABILITY OF INTRACRANIAL ANEURYSMS.

Pan European Networks. Science & Technology, 18. 1-4.

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Using thesauruses as a heuristics for mapping values

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Cognitive Systems Research, 40 59-74. Peer reviewed.

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What’s ugly? Shape-based analysis of intracranial aneurysms

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In: Latsis Symposium ETH Zürich. On Personalized Medicine. Zürich: Latsis Foundation. Peer reviewed.

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A Partial Domain Approach to Enable Aortic Flow Simulation Without Turbulent Modeling

: MICCAI – Medical Image Computing and Computer-Assisted Intervention.

Lecture Notes in Computer Science , 9350 544-551. Peer reviewed.

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A robust comparison approach of velocity data between MRI and CFD based on divergence-free space projection

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IEEE International Symposium on Biomedical Imaging, April 16-19, New York. Peer reviewed.

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A Spin Physics-based Framework for Hybrid Recommendation Systems

: conference talk.

In: NDES Nonlinear Dynamics of Electronic Systems. A European Physical Society Sponsored Conference:. (September ). Como: NDES. Peer reviewed.

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Aneurysmen – eine Datenbank soll die Behandlung verbessern

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Transfer, 2. 6.

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Bessere Absatzprognosen: Eine Frage der Faktoren

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Logistics Innovation

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Big Data und Produktionssteuerung in der Lebensmittel-Industrie

: Tagungsreferat .

In: Wädenswiler Lebensmitteltagung 2015: Lebensmittel 4.0. Tagung. (19. November 2015). Wädenswil: ZHAW.

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Computational Framework for Personalized Characterization of Aneurysm Physics and Physiology, as well as Disease Progression Modelling

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European Solid Mechanics Conference Madrid Peer reviewed.

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Computational methods for detecting and analyzing tandem repeats

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In: Non-globular proteins - from sequence to structure, function and application in molecular physiopathology. NGP-NET symposium. Porto, Portugal: COST action BM1405.

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Current methods for automated filtering of multiple sequence alignments frequently worsen single-gene phylogenetic inference

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Systematic biology, 64, 5. 778/791.

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Disentangling tandem repeats and their evolutionary histories using statistical prediction

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In: First NGP-net symposium on non-globular proteins. Non-globular proteins - from sequence to function, structure and application in molecular physiopathology (NGP-net). Porto, Portugal: COST action BM1405 .

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Disentangling tandem repeats, their evolution and roles in genomic sequences

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In: EES seminar series. Munich: LMU.

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Emerging Practices in Foresight and Their Use in STI Policy

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STI Policy Review, 6, 2. 24-53. Peer reviewed.

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European government bond dynamics and stability policies: taming contagion risks

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Journal of Network Theory in Finance, 1, 4. Peer reviewed.

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European Government Bond Dynamics and Stability Policies: Taming Contagion Risks

: Poster Session 6th ESOBE Conference.

In: Complexity in Economics: Big Data and Parallelization, 6th ESOBE Conference. Konferenz. Study Center Gerzensee: Study Center Gerzensee. Peer reviewed.

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Forschung und Praxis: Optimierte Absatzprognosen für den Lebensmittelhandel

: Tagungsreferat.

In: Best Practice in der Lebensmittellogistik. Tagung. (1. September 2015). Hamburg: Logistik Heute.

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Functional Assignment to Positively Selected Sites in the Core Type III Effector RipG7 from Ralstonia solanacearum

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Molecular Plant Pathology DOI: 10.1111/mpp.12302. Peer reviewed.

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Global circulation patterns of human influenza A virus subtypes

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In: Life in Numbers 2. Gemomics and Evolution of Microbial Pathogens. Wädenswil, ZH: ZHAW.

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Intracranial aneurysms rupture risk clinical assessment

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European Solid Mechanics Conference Madrid Peer reviewed.

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Joint 3-D Vessel Segmentation and Centerline Extraction Using Oblique Hough Forests with Steerable Filters

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Medical Image Analysis, 19, 1. 220-49. Peer reviewed.

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Maximum-Likelihood Tree Estimation Using Codon Substitution Models with Multiple Partitions

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In: Mol Biol Evol. Oxford: Oxford University Press. Peer reviewed.

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Methodologies for Phylogenetic Inference

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Encyclopedia of Life Sciences eLS: 1–5.. Peer reviewed.

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Methodologies for phylogenetic inference

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In: Encyclopedia of Life Sciences . Hoboken, New Jersey, United States: John Wiley & Sons.

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Micro-text Classification between Small and Big Data

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Nonlinear Theory and Its Applications, IEICE, Vol.E6-N, 4. Peer reviewed.

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Modelling Alterations in Hemodynamics Caused by Aneurysm Implants

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In: Niels Kuster (Hg.). . Presentation: Meet the experts.

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Next Generation Comparative Phylogenomics

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In: Phylogenomics for NGS data. Geneva: StarOmics symposium.

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On the Utility of 3D Zernike Moment Invariants to assess Aneurysm Disease Status

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In: All SystemsX Day. Poster Presentations. Bern: SystemsX.ch.

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Reasons and time course of mesh explantations following alloplastic hernia repair in 262 patients

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World Journal of Gastrointestinal Surgery Peer reviewed.

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Recurrence-free survival, but not surgical therapy per se, determines 583 patients' long-term satisfaction following primary pilonidal sinus surgery

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Int J Colorectal Dis. Peer reviewed.

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Simple chained guide trees give poorer multiple sequence alignments than inferred trees in simulation and phylogenetic benchmarks

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Proceedings of the National Academy of Sciences, 112, 2. E99/E100.

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Statistical approaches to detecting and analyzing tandem repeats in genomic sequences

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Frontiers Bioeng Biotech (to appear). Peer reviewed.

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The role of clot maturation inside intracranial aneurysms using a viscoelastic thrombosis model

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European Solid Mechanics Conference Madrid Peer reviewed.

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The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases

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In: Nucleic Acids Research. (doi: 10.1093/nar/gkv1310). Oxford: Oxford University Press. Peer reviewed.

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TRAL: Tandem repeat annotation library

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In: Bioinformatics. (31 (18): 3051-3053). Oxford: Oxford University press. Peer reviewed.

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2D viscoelastic thrombosis model for stented aneurysms

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World Conference on Biomechanics, Boston, MA, 6-11th July. Peer reviewed.

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Abdrift reduzieren - Mögliche Massnahmen im Praxisversuch geprüft

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Obstbau, 4.

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Antibody-specific model of amino acid substitution for immunological inferences from alignments of antibody sequences

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Mol Biol Evol doi: 10.1093/molbev/msu340. Peer reviewed.

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Bioinformatique et génomique (in French)

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In: . Lycée de la Planta: Sion.

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Causality Detection in Complex Time Dependent Systems Examplified in Financial Time Series

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Proceedings of NOLTA 2014 Peer reviewed.

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Complex Forecasting

: Referat.

In: Rüdlinger Tagung . (10.9.2014). Rüdlingen: IAMP.

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Computational Stent Placement in Transcatheter Aortic Valve Implantation

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In: Lecture Notes in Computer Science. Volume 8789. Cambridge: Springer. Peer reviewed.

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Deep conservation of human protein tandem repeats within the eukaryotes. doi: 10.1093/molbev/msu062

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MolBiol Evol, 31 , 5. 1132-1148. Peer reviewed.

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Driftreduzierende Massnahmen im Praxisversuch

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Obstbau Weinbau, 4.

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Expertensystem für Werbeartikel

: Entwicklung eines auf Bayes Netzwerken basierenden Expertensystems und seiner Anwendung in einer konkreten Marktsituation.

TRANSFER Nr. 1 / April 2014, 1. 4.

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Generating Low-Dimensional Denoised Representations of Nonlinear Data with Superparamagnetic Agents

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Proceedings of Nonlinear Theory and Applications 180-183. Peer reviewed.

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GNOME 2014 Festschrift (Edited collection)

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In: . Zurich: PeerJPrePrints.

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Image-Based Mechanical Analysis of Stent Deformation. Concept and Exemplary Implementation for TAVI Stents

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IEEE Transactions on Biomedical Engineering, 60, 1. 4-15. Peer reviewed.

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Improving the Forecast of Freight Transport Demand Using Machine Learning and Time Series Analysis

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Conference Paper, 14th Swiss Transport Research Conference Peer reviewed.

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Joint alignmnet and phylogeny for large genomics data

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Transfer, 3

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Learning long-term dependencies in segmented-memory recurrent neural networks with backpropagation of error

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Neurocomputing, 141. 54 - 64. Peer reviewed.

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Logistiksimulation kombiniert mit Optimierungsalgorithmen

: Werkzeug für die automatisierte Anlagenkonfiguration.

Logistics Innovation, 1. 34-36.

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Natural selection at coding and non-coding DNA mainly affects pathogenicity-related genes in the hemibiotrophic fungus Colletotrichum graminicola.

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Genome Biol Evol, 6 , 9. 2368-2379. Peer reviewed.

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Predicting aneurysm healing after treatment

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In: . Rüdlinger Tagung: -.

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Simulation als Diskussions- und Optimierungstool

: Erfahrungen aus der Praxis.

In: SIMULATION UND SCHEDULING IN PRODUKTION, LOGISTIK, SCM UND AN HOCHSCHULEN. Rapperswil: HSR Rapperswil.

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Stauentwicklungen: Daten- und modellgestützte Erkenntnisse zur Verkehrsflussprognose und Verkehrsflussoptimierung

: Keynote Referat.

In: 1. Nationaler Stautag. (19. Mai 2014). Verkehrshaus Luzern: Viasuisse.

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Stauprognoseverfahren und -systeme

: Forschungsprojekt ASTRA 2011/010.

Bezug: VSS .

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TGIF: Topological gap in-fill for correction of vascular connectivity –- A generative physiological modeling approach

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In: Medical Image Computing and Computer-Assisted Intervention – MICCAI 2014 (89-96). (17. Aufl.) Peer reviewed.

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The Challenge of Clustering Flow Cytometry Data from Phytoplankton in Lakes

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CCIS, 438 379 - 386. Peer reviewed.

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The evolution and function of protein tandem repeats in plants. New Phytologist

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New Phytologist, doi: 10.1111/nph.13184 Peer reviewed.

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The traces of anisotropic dark energy in light of Planck

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Journal of Cosmology and Astroparticle Physics, 1407 032. Peer reviewed.

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Verpflegungsmanagement im Spital als Schnittstellenaufgabe

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Transfer, 1. 3.

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Visualisation of multiple sequence alignment and phylogeny

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In: VIZBI. Heidelberg: Germany.

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Was erwarten wir von computergestützten Methoden in den Lebenswissenschaften

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In: . Life in Numbers: Wädenswil.

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A new measure for party coherence: applying a physics-based concept to the Swiss party system, 2003-2008.

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Advances in Complex Systems , 16 1350011. Peer reviewed.

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A Semi-Supervised Learning System for Micro-Text Classification

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NDES 13 (extended abstract & talk) Peer reviewed.

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A Sequential Classification Concept using Flawed Training Data - An Application to Flow Cytometry

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NDES 2013 (Extended Abstract & Talk) Peer reviewed.

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Abdrift - reduzierende Massnahmen im Praxisversuch / Réduction de la dérive: essai pratique

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Agrarforschung Schweiz / Recherche Agronomique Suisse , 4.

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Annotation and Classification of Changes of Involvement in Group Conversation

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In: Proceedings of the 2013 Humaine Association Conference on Affective Computing and Intelligent Interaction. (803-808). Piscataway, NJ, USA: IEEE.