Publications of the Environmental Genomics and Systems Biology Research Group
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Stefani, Emilio; Loreti, Stefania; Costa, Joana; Cunty, Amandine; Pothier, Joël F.,
2021.
PM 7/120 (2) Pseudomonas syringae pv. actinidiae.
EPPO Bulletin
; 51(3).
Wiley.
Available from: https://doi.org/10.1111/epp.12782
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Fahrentrapp, Johannes; Rezzonico, Fabio,
2021.
Upregulation of gray mold-induced plant genes in uninfected rachis tissue.
International Journal of Pest Management.
69(4), pp. 359-365.
Available from: https://doi.org/10.1080/09670874.2021.1936278
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Puławska, Joanna; Kałużna, Monika; Warabieda, Wojciech; Pothier, Joël F.; Gétaz, Michael; van der Wolf, Jan M.,
2020.
Transcriptome analysis of Xanthomonas fragariae in strawberry leaves.
Scientific Reports.
10(20582).
Available from: https://doi.org/10.1038/s41598-020-77612-y
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Gaganidze, Dali; Sadunishvili, Tinatin; Aznarashvili, Mariam; Abashidze, Ekaterine; Gurielidze, Manana; Carnal, Simon; Rezzonico, Fabio; Zubadalashvili, Manana,
2020.
Fire blight distribution in Georgia and characterization of selected Erwinia amylovora isolates.
Journal of Plant Pathology.
103(Suppl 1), pp. 121-129.
Available from: https://doi.org/10.1007/s42161-020-00700-5
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Murray, Alison E.; Freudenstein, John; Gribaldo, Simonetta; Hatzenpichler, Roland; Hugenholtz, Philip; Kämpfer, Peter; Konstantinidis, Konstantinos T.; Lane, Christopher E.; Papke, R. Thane; Parks, Donovan H.; Rossello-Mora, Ramon; Stott, Matthew B.; Sutcliffe, Iain C.; Thrash, J. Cameron; Venter, Stephanus N.; Whitman, William B.; Acinas, Silvia G.; Amann, Rudolf I.; Anantharaman, Karthik; Armengaud, Jean; Baker, Brett J.; Barco, Roman A.; Bode, Helge B.; Boyd, Eric S.; Brady, Carrie L.; Carini, Paul; Chain, Patrick S. G.; Colman, Daniel R.; DeAngelis, Kristen M.; de los Rios, Maria Asuncion; Estrada-de los Santos, Paulina; Dunlap, Christopher A.; Eisen, Jonathan A.; Emerson, David; Ettema, Thijs J. G.; Eveillard, Damien; Girguis, Peter R.; Hentschel, Ute; Hollibaugh, James T.; Hug, Laura A.; Inskeep, William P.; Ivanova, Elena P.; Klenk, Hans-Peter; Li, Wen-Jun; Lloyd, Karen G.; Löffler, Frank E.; Makhalanyane, Thulani P.; Moser, Duane P.; Nunoura, Takuro; Palmer, Marike; Parro, Victor; Pedrós-Alió, Carlos; Probst, Alexander J.; Smits, Theo; Steen, Andrew D.; Steenkamp, Emma T.; Spang, Anja; Stewart, Frank J.; Tiedje, James M.; Vandamme, Peter; Wagner, Michael; Wang, Feng-Ping; Yarza, Pablo; Hedlund, Brian P.; Reysenbach, Anna-Louise,
2020.
Author correction : roadmap for naming uncultivated archaea and bacteria.
Nature Microbiology.
6(1), pp. 136.
Available from: https://doi.org/10.1038/s41564-020-00827-2
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Dia, Nay C.; Rezzonico, Fabio; Smits, Theo H. M.; Pothier, Joël F.,
2020.
Microbiology Resource Announcements.
9(41), pp. e00828-20.
Available from: https://doi.org/10.1128/MRA.00828-20
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Martins, Leonor; Fernandes, Camila; Blom, Jochen; Dia, Nay C.; Pothier, Joël F.; Tavares, Fernando,
2020.
International Journal of Systematic and Evolutionary Microbiology.
70(12), pp. 6024-6031.
Available from: https://doi.org/10.1099/ijsem.0.004386
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Kaufmann, Moritz; Schüle, Martin; Smits, Theo; Pothier, Joël,
2020.
Typing plasmids with distributed sequence representation [paper].
In:
Schilling, Frank-Peter; Stadelmann, Thilo, eds.,
Artificial Neural Networks in Pattern Recognition.
9th IAPR TC 3 Workshop on Artificial Neural Networks for Pattern Recognition (ANNPR'20), Winterthur, Switzerland, 2-4 September 2020.
Cham:
Springer.
pp. 200-210.
Lecture Notes in Computer Science ; 12294.
Available from: https://doi.org/10.1007/978-3-030-58309-5_16
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Gétaz, Michael; Puławska, Joanna; Smits, Theo H.M.; Pothier, Joël F.,
2020.
Microorganisms.
8(8), pp. 1253.
Available from: https://doi.org/10.3390/microorganisms8081253
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Gétaz, Michael; Blom, Jochen; Smits, Theo H. M.; Pothier, Joël F.,
2020.
Phytopathology Research.
2020(2), pp. 17.
Available from: https://doi.org/10.1186/s42483-020-00061-y
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Escursell, Mireia Marcé; Roschi, Alexia; Smits, Theo; Rezzonico, Fabio,
2020.
Journal of Plant Pathology.
103(Suppl 1), pp. 99-108.
Available from: https://doi.org/10.1007/s42161-020-00600-8
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Murray, Alison E.; Freudenstein, John; Gribaldo, Simonetta; Hatzenpichler, Roland; Hugenholtz, Philip; Kämpfer, Peter; Konstantinidis, Konstantinos T.; Lane, Christopher E.; Papke, R. Thane; Parks, Donovan H.; Rossello-Mora, Ramon; Stott, Matthew B.; Sutcliffe, Iain C.; Thrash, J. Cameron; Venter, Stephanus N.; Whitman, William B.; Acinas, Silvia G.; Amann, Rudolf I.; Anantharaman, Karthik; Armengaud, Jean; Baker, Brett J.; Barco, Roman A.; Bode, Helge B.; Boyd, Eric S.; Brady, Carrie L.; Carini, Paul; Chain, Patrick S. G.; Colman, Daniel R.; DeAngelis, Kristen M.; de los Rios, Maria Asuncion; Estrada-de los Santos, Paulina; Dunlap, Christopher A.; Eisen, Jonathan A.; Emerson, David; Ettema, Thijs J. G.; Eveillard, Damien; Girguis, Peter R.; Hentschel, Ute; Hollibaugh, James T.; Hug, Laura A.; Inskeep, William P.; Ivanova, Elena P.; Klenk, Hans-Peter; Li, Wen-Jun; Lloyd, Karen G.; Löffler, Frank E.; Makhalanyane, Thulani P.; Moser, Duane P.; Nunoura, Takuro; Palmer, Marike; Parro, Victor; Pedrós-Alió, Carlos; Probst, Alexander J.; Smits, Theo H.M.; Steen, Andrew D.; Steenkamp, Emma T.; Spang, Anja; Stewart, Frank J.; Tiedje, James M.; Vandamme, Peter; Wagner, Michael; Wang, Feng-Ping; Hedlund, Brian P.; Reysenbach, Anna-Louise,
2020.
Roadmap for naming uncultivated archaea and bacteria.
Nature Microbiology.
5(8), pp. 987-994.
Available from: https://doi.org/10.1038/s41564-020-0733-x
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Rothen, Julian; Sapugahawatte, Dulmini Nanayakkara; Li, Carmen; Lo, Norman; Vogel, Guido; Foucault, Frédéric; Pflüger, Valentin; Pothier, Joël; Blom, Jochen; Daubenberger, Claudia; Ip, Margaret,
2020.
Scientific Reports.
10(8788).
Available from: https://doi.org/10.1038/s41598-020-65707-5
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Madhaiyan, Munusamy; Saravanan, Venkatakrishnan Sivaraj; Blom, Jochen; Smits, Theo; Rezzonico, Fabio; Kim, Soo-Jin; Weon, Hang-Yeon; Kwon, Soon-Wo; Whitman, William B.; Ji, Lianghui,
2020.
International Journal of Systematic and Evolutionary Microbiology.
70(2), pp. 841-848.
Available from: https://doi.org/10.1099/ijsem.0.003834
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Fossou, Romain K.; Pothier, Joël F.; Zézé, Adolphe; Perret, Xavier,
2020.
International Journal of Systematic and Evolutionary Microbiology.
70(2), pp. 1421-1430.
Available from: https://doi.org/10.1099/ijsem.0.003931
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Oh, Woo Taek; Jun, Jin Woo; Giri, Sib Sankar; Yun, Saekil; Kim, Hyoun Joong; Kim, Sang Guen; Kim, Sang Wha; Kang, Jeong Woo; Han, Se Jin; Kwon, Jun; Kim, Ji Hyung; Smits, Theo H.M.; Park, Se Chang,
2019.
Pseudomonas tructae sp. nov., novel species isolated from rainbow trout kidney.
International Journal of Systematic and Evolutionary Microbiology.
69(12), pp. 3851-3856.
Available from: https://doi.org/10.1099/ijsem.0.003696
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Schneeberger, Pierre H. H.; Fuhrimann, Samuel; Becker, Sören L.; Pothier, Joël F.; Duffy, Brion; Beuret, Christian; Frey, Jürg E.; Utzinger, Jürg,
2019.
Qualitative microbiome profiling along a wastewater system in Kampala, Uganda.
Scientific Reports.
9(1), pp. 17334.
Available from: https://doi.org/10.1038/s41598-019-53569-5
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Smits, Theo H.M.,
2019.
The importance of genome sequence quality to microbial comparative genomics.
BMC Genomics.
20(662).
Available from: https://doi.org/10.1186/s12864-019-6014-5
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Smits, Theo H.M.; Duffy, Brion; Blom, Jochen; Ishimaru, Carol A.; Stockwell, Virginia O.,
2019.
Archives of Microbiology.
201(6), pp. 713-722.
Available from: https://doi.org/10.1007/s00203-019-01647-7
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Luedin, Samuel M.; Storelli, Nicola; Danza, Francesco; Roman, Samuele; Wittwer, Matthias; Pothier, Joël F.; Tonolla, Mauro,
2019.
Frontiers in Microbiology.
10(384).
Available from: https://doi.org/10.3389/fmicb.2019.00384