Publikationen der Forschungsgruppe Umweltgenomik und Systembiologie

Rothen, Julian; Schindler, Tobias; Pothier, Joël F.; Younan, Mario; Certa, Ulrich; Daubenberger, Claudia; Pflüger, Valentin; Jores, Joerg,

2017.

Draft genome sequences of seven Streptococcus agalactiae strains isolated from Camelus dromedarius at the horn of Africa.

Genome Announcements.

5(28).

Verfügbar unter: https://doi.org/10.21256/zhaw-1482

Schneeberger, Pierre H.H.; Pothier, Joël F.; Bühlmann, Andreas; Duffy, Brion; Beuret, Christian; Utzinger, Jürg; Frey, Jürg E.,

2017.

Development and evaluation of a bioinformatics approach for designing molecular assays for viral detection.

PLOS ONE.

12(5).

Verfügbar unter: https://doi.org/10.21256/zhaw-1481

Schmautz, Zala; Graber, Andreas; Jaenicke, Sebastian; Goesmann, Alexander; Junge, Ranka; Smits, Theo H. M.,

2017.

Microbial diversity in different compartments of an aquaponics system.

Archives of Microbiology.

199(4), S. 613-620.

Verfügbar unter: https://doi.org/10.21256/zhaw-1593

Mustafa, Sabit; Palmisano, Marilena; van To, Rob W. H. M.; Grunder, Jürg,

2017.

Taxonomic attribution of natural isolates of entomopathogenic fungi in certain regions in Switzerland and their impact in the cockchafer grubs' control[Paper].

In:

Proceedings of the 5th Congress of the Ecologists of Macedonia, with international participation.

5th Congress of the Ecologists of Macedonia, Ohrid, Macedonia, 19-22 October 2016.

Skopje:

Macedonian Ecological Society.

S. 17-21.

Verfügbar unter: https://doi.org/10.21256/zhaw-35800

Saponari, Maria; Gétaz, Michael; Palkovics, László; Kuzmanović, Nemanja; Puławska, Joanna; Ruinelli, Michela; Pothier, Joël; Obradović, Aleksa; Boscia, Donato; Végh, Anita; Kałużna, Monika,

2017.

Bacterial diseases.

In:

Quero-García, José; Iezzoni, Amy; Puławska, Joanna; Lang, Gregory, Hrsg.,

Cherries : botany, production and uses.

Wallingford:

CAB International.

Palmer, Marike; Steenkamp, Emma T.; Coetzee, Martin P.A.; Chan, Wai-Yin; van Zyl, Elritha; De Maayer, Pieter; Coutinho, Teresa A.; Blom, Jochen; Smits, Theo; Duffy, Brion; Venter, Stephanus N.,

2017.

Phylogenomic resolution of the bacterial genus Pantoea and its relationship with Erwinia and Tatumella.

Antonie van Leeuwenhoek.

110(10), S. 1287-1309.

Verfügbar unter: https://doi.org/10.21256/zhaw-1556

Kupferschmied, Peter; Chai, Tiancong; Flury, Pascale; Blom, Jochen; Smits, Theo; Maurhofer, Monika; Keel, Christoph,

2016.

Specific surface glycan decorations enable antimicrobial peptide resistance in plant-beneficial pseudomonads with insect-pathogenic properties.

Environmental Microbiology.

18(11), S. 4265-4281.

Kałużna, Monika; Willems, Anne; Pothier, Joël F.; Ruinelli, Michela; Sobiczewski, Piotr; Puławska, Joanna,

2016.

Pseudomonas cerasi sp. nov. (non Griffin, 1911) isolated from diseased tissue of cherry.

Systematic and Applied Microbiology.

39(6), S. 370-377.

Ruinelli, Michela; Schneeberger, Pierre H.H; Ferrante, Patrizia; Bühlmann, Andreas; Scortichini, Marco; Vanneste, Joel L.; Duffy, Brion; Pothier, Joël F.,

2016.

Comparative genomics-informed design of two LAMP detection assays for detection of the kiwifruit pathogen Pseudomonas syringae pv. actinidiae and discrimination of isolates belonging to the pandemic biovar 3.

Plant Pathology.

66(1), S. 140-149.

Schneeberger, Pierre H.H.; Becker, Sören L.; Pothier, Joël F.; Duffy, Brion; N'Goran, Eliézer K.; Beuret, Christian; Frey, Jürg E.; Utzinger, Jürg,

2016.

Metagenomic diagnostics for the simultaneous detection of multiple pathogens in human stool specimens from Côte d’Ivoire : a proof-of-concept study.

Infection, Genetics and Evolution.

40, S. 389-397.

Puławska, Joanna; Kuzmanović, Nemanja; Willems, Anne; Pothier, Joël F.,

2016.

Pararhizobium polonicum sp. nov. isolated from tumors on stone fruit rootstocks.

Systematic and Applied Microbiology.

39(3), S. 164-169.

Rezzonico, Fabio; Smits, Theo; Born, Yannick; Blom, Jochen; Frey, Jürg E.; Goesmann, Alexander; Cleenwerck, Ilse; de Vos, Paul; Bonaterra, Anna; Duffy, Brion; Montesinos, Emilio,

2016.

Erwinia gerundensis sp. nov. : a cosmopolitan epiphyte originally isolated from pome fruit trees.

International Journal of Systematic and Evolutionary Microbiology.

66, S. 1583-1592.

Kamber, Tim; Buchmann, Jan P.; Pothier, Joël; Smits, Theo; Wicker, Thomas; Duffy, Brion,

2016.

Fire blight disease reactome : RNA-seq transcriptional profile of apple host plant defence responses to Erwinia amylovora pathogen infection.

Scientific Reports.

6(21600).

Verfügbar unter: https://doi.org/10.21256/zhaw-1462

Kałużna, Monika; Willems, Anne; Pothier, Joël F.; Ruinelli, Michela; Sobiczewski, Piotr; Puławska, Joanna,

2016.

Characterization and genetic diversity of causal agent of stone fruit bacterial canker Pseudomonas cerasi : a new pathogen of cherry[Paper].

In:

II International Workshop on Bacterial Diseases of Stone Fruits and Nuts.

II International Workshop on Bacterial Diseases of Stone Fruits and Nuts, Izmir, Turkey, 21 April 2015.

International Society for Horticultural Science.

S. 9-14.

Konavko, Dmitrijs; Malchev, Svetoslav; Pothier, Joël F.; Jundzis, Māris; Moročko-Bičevska, Inga; Rezzonico, Fabio,

2016.

Diversity and host range of Pseudomonas in fruit tree species in Latvia.

Acta Horticulturae.

1149, S. 25-30.

Flury, Pascale; Aellen, Nora; Ruffner, Beat; Péchy-Tarr, Maria; Fataar, Shakira; Metla, Zane; Dominguez-Ferreras, Ana; Bloemberg, Guido; Frey, Joachim; Goesmann, Alexander; Raaijmakers, Jos M; Duffy, Brion; Höfte, Monica; Blom, Jochen; Smits, Theo; Keel, Christoph; Maurhofer, Monika,

2016.

Insect pathogenicity in plant-beneficial pseudomonads : phylogenetic distribution and comparative genomics.

ISME Journal: Multidisciplinary Journal of Microbial Ecology.

10, S. 2527-2542.

Wirthner-Bitterlin, Lisa; Reifler-Bächtiger, Martina; Palmisano, Marilena; Egloff, Sophia; Briner, Thomas; Capt, Simon; Graf, Roland F.,

2016.

Kleinsäuger mit Haarproben zuverlässig bestimmen.

Vierteljahrsschrift der Naturforschenden Gesellschaft in Zürich.

161(1), S. 9-11.

Verfügbar unter: https://doi.org/10.21256/zhaw-4288

Smits, Theo H.M.; Rezzonico, Fabio; Blom, Jochen; Goesmann, Alexander; Abelli, Azzurra; Kron Morelli, Roberto; Vanneste, Joël L.; Duffy, Brion,

2015.

Draft genome sequence of the commercial biocontrol strain Pantoea agglomerans P10c.

Genome Announcements.

3(6).

Verfügbar unter: https://doi.org/10.21256/zhaw-1464

Chairat, Sarra; Gharsa, Haythem; Lozano, Carmen; Gómez-Sanz, Elena; Gómez, Paula; Zarazaga, Myriam; Boudabous, Abdellatif; Torres, Carmen; Ben Slama, Karim,

2015.

Characterization of Staphylococcus aureus from raw meat samples in Tunisia : detection of clonal lineage ST398 from the African continent.

Foodborne Pathogens and Disease.

12(8), S. 686-692.

Smits, Theo H. M.; Pothier, Joël F.; Ruinelli, Michela; Blom, Jochen; Frasson, David; Koechli, Chantal; Fabbri, Carlotta; Brandl, Helmut; Duffy, Brion; Sievers, Martin,

2015.

Complete genome sequence of the cyanogenic phosphate-solubilizing Pseudomonas sp. strain CCOS 191 : a close relative of Pseudomonas mosseli.

Genome Announcements.

3(3).

Verfügbar unter: https://doi.org/10.21256/zhaw-1463