Publikationen der Forschungsgruppe Umweltgenomik und Systembiologie

Mustafa, Sabit; Palmisano, Marilena; van To, Rob W. H. M.; Grunder, Jürg,

2017.

Taxonomic attribution of natural isolates of entomopathogenic fungi in certain regions in Switzerland and their impact in the cockchafer grubs' control[Paper].

In:

Proceedings of the 5th Congress of the Ecologists of Macedonia, with international participation.

5th Congress of the Ecologists of Macedonia, Ohrid, Macedonia, 19-22 October 2016.

Skopje:

Macedonian Ecological Society.

S. 17-21.

Verfügbar unter: https://doi.org/10.21256/zhaw-35800

Saponari, Maria; Gétaz, Michael; Palkovics, László; Kuzmanović, Nemanja; Puławska, Joanna; Ruinelli, Michela; Pothier, Joël; Obradović, Aleksa; Boscia, Donato; Végh, Anita; Kałużna, Monika,

2017.

Bacterial diseases.

In:

Quero-García, José; Iezzoni, Amy; Puławska, Joanna; Lang, Gregory, Hrsg.,

Cherries : botany, production and uses.

Wallingford:

CAB International.

Palmer, Marike; Steenkamp, Emma T.; Coetzee, Martin P.A.; Chan, Wai-Yin; van Zyl, Elritha; De Maayer, Pieter; Coutinho, Teresa A.; Blom, Jochen; Smits, Theo; Duffy, Brion; Venter, Stephanus N.,

2017.

Phylogenomic resolution of the bacterial genus Pantoea and its relationship with Erwinia and Tatumella.

Antonie van Leeuwenhoek.

110(10), S. 1287-1309.

Verfügbar unter: https://doi.org/10.1007/s10482-017-0852-4

Kupferschmied, Peter; Chai, Tiancong; Flury, Pascale; Blom, Jochen; Smits, Theo; Maurhofer, Monika; Keel, Christoph,

2016.

Specific surface glycan decorations enable antimicrobial peptide resistance in plant-beneficial pseudomonads with insect-pathogenic properties.

Environmental Microbiology.

18(11), S. 4265-4281.

Verfügbar unter: https://doi.org/10.1111/1462-2920.13571

Kałużna, Monika; Willems, Anne; Pothier, Joël F.; Ruinelli, Michela; Sobiczewski, Piotr; Puławska, Joanna,

2016.

Pseudomonas cerasi sp. nov. (non Griffin, 1911) isolated from diseased tissue of cherry.

Systematic and Applied Microbiology.

39(6), S. 370-377.

Verfügbar unter: https://doi.org/10.1016/j.syapm.2016.05.005

Ruinelli, Michela; Schneeberger, Pierre H.H; Ferrante, Patrizia; Bühlmann, Andreas; Scortichini, Marco; Vanneste, Joel L.; Duffy, Brion; Pothier, Joël F.,

2016.

Comparative genomics-informed design of two LAMP detection assays for detection of the kiwifruit pathogen Pseudomonas syringae pv. actinidiae and discrimination of isolates belonging to the pandemic biovar 3.

Plant Pathology.

66(1), S. 140-149.

Verfügbar unter: https://doi.org/10.1111/ppa.12551

Schneeberger, Pierre H.H.; Becker, Sören L.; Pothier, Joël F.; Duffy, Brion; N'Goran, Eliézer K.; Beuret, Christian; Frey, Jürg E.; Utzinger, Jürg,

2016.

Metagenomic diagnostics for the simultaneous detection of multiple pathogens in human stool specimens from Côte d’Ivoire : a proof-of-concept study.

Infection, Genetics and Evolution.

40, S. 389-397.

Verfügbar unter: https://doi.org/10.1016/j.meegid.2015.08.044

Puławska, Joanna; Kuzmanović, Nemanja; Willems, Anne; Pothier, Joël F.,

2016.

Pararhizobium polonicum sp. nov. isolated from tumors on stone fruit rootstocks.

Systematic and Applied Microbiology.

39(3), S. 164-169.

Verfügbar unter: https://doi.org/10.1016/j.syapm.2016.03.002

Rezzonico, Fabio; Smits, Theo; Born, Yannick; Blom, Jochen; Frey, Jürg E.; Goesmann, Alexander; Cleenwerck, Ilse; de Vos, Paul; Bonaterra, Anna; Duffy, Brion; Montesinos, Emilio,

2016.

Erwinia gerundensis sp. nov. : a cosmopolitan epiphyte originally isolated from pome fruit trees.

International Journal of Systematic and Evolutionary Microbiology.

66, S. 1583-1592.

Verfügbar unter: https://doi.org/10.1099/ijsem.0.000920

Kamber, Tim; Buchmann, Jan P.; Pothier, Joël; Smits, Theo; Wicker, Thomas; Duffy, Brion,

2016.

Fire blight disease reactome : RNA-seq transcriptional profile of apple host plant defence responses to Erwinia amylovora pathogen infection.

Scientific Reports.

6(21600).

Verfügbar unter: https://doi.org/10.1038/srep21600

Kałużna, Monika; Willems, Anne; Pothier, Joël F.; Ruinelli, Michela; Sobiczewski, Piotr; Puławska, Joanna,

2016.

Characterization and genetic diversity of causal agent of stone fruit bacterial canker Pseudomonas cerasi : a new pathogen of cherry[Paper].

In:

II International Workshop on Bacterial Diseases of Stone Fruits and Nuts.

II International Workshop on Bacterial Diseases of Stone Fruits and Nuts, Izmir, Turkey, 21 April 2015.

International Society for Horticultural Science.

S. 9-14.

Verfügbar unter: https://doi.org/10.17660/ActaHortic.2016.1149.2

Konavko, Dmitrijs; Malchev, Svetoslav; Pothier, Joël F.; Jundzis, Māris; Moročko-Bičevska, Inga; Rezzonico, Fabio,

2016.

Diversity and host range of Pseudomonas in fruit tree species in Latvia.

Acta Horticulturae.

1149, S. 25-30.

Verfügbar unter: https://doi.org/10.17660/ActaHortic.2016.1149.5

Flury, Pascale; Aellen, Nora; Ruffner, Beat; Péchy-Tarr, Maria; Fataar, Shakira; Metla, Zane; Dominguez-Ferreras, Ana; Bloemberg, Guido; Frey, Joachim; Goesmann, Alexander; Raaijmakers, Jos M; Duffy, Brion; Höfte, Monica; Blom, Jochen; Smits, Theo; Keel, Christoph; Maurhofer, Monika,

2016.

Insect pathogenicity in plant-beneficial pseudomonads : phylogenetic distribution and comparative genomics.

ISME Journal: Multidisciplinary Journal of Microbial Ecology.

10, S. 2527-2542.

Verfügbar unter: https://doi.org/10.1038/ismej.2016.5

Wirthner-Bitterlin, Lisa; Reifler-Bächtiger, Martina; Palmisano, Marilena; Egloff, Sophia; Briner, Thomas; Capt, Simon; Graf, Roland F.,

2016.

Kleinsäuger mit Haarproben zuverlässig bestimmen.

Vierteljahrsschrift der Naturforschenden Gesellschaft in Zürich.

161(1), S. 9-11.

Verfügbar unter: https://doi.org/10.21256/zhaw-4288

Smits, Theo H.M.; Rezzonico, Fabio; Blom, Jochen; Goesmann, Alexander; Abelli, Azzurra; Kron Morelli, Roberto; Vanneste, Joël L.; Duffy, Brion,

2015.

Draft genome sequence of the commercial biocontrol strain Pantoea agglomerans P10c.

Genome Announcements.

3(6).

Verfügbar unter: https://doi.org/10.1128/genomeA.01448-15

Chairat, Sarra; Gharsa, Haythem; Lozano, Carmen; Gómez-Sanz, Elena; Gómez, Paula; Zarazaga, Myriam; Boudabous, Abdellatif; Torres, Carmen; Ben Slama, Karim,

2015.

Characterization of Staphylococcus aureus from raw meat samples in Tunisia : detection of clonal lineage ST398 from the African continent.

Foodborne Pathogens and Disease.

12(8), S. 686-692.

Verfügbar unter: https://doi.org/10.1089/fpd.2015.1958

Smits, Theo H. M.; Pothier, Joël F.; Ruinelli, Michela; Blom, Jochen; Frasson, David; Koechli, Chantal; Fabbri, Carlotta; Brandl, Helmut; Duffy, Brion; Sievers, Martin,

2015.

Complete genome sequence of the cyanogenic phosphate-solubilizing Pseudomonas sp. strain CCOS 191 : a close relative of Pseudomonas mosseli.

Genome Announcements.

3(3).

Verfügbar unter: https://doi.org/10.1128/genomeA.00616-15

De Maayer, Pieter; Chan, Wai-Yin; Martin, Douglas A.; Blom, Jochen; Venter, Stephanus N.; Duffy, Brion; Cowan, Don A.; Smits, Theo H. M.; Coutinho, Teresa A.,

2015.

Integrative conjugative elements of the ICEPan family play a potential role in Pantoea ananatis ecological diversification and antibiosis.

Frontiers in Microbiology.

6(576).

Verfügbar unter: https://doi.org/10.3389/fmicb.2015.00576

Palacio-Bielsa, Ana; López-Soriano, Pablo; Bühlmann, Andreas; van Doorn, Joop; Pham, Khanh; Cambra, Miguel A.; Berruete, Isabel M.; Pothier, Joël F.; Duffy, Brion; Olmos, Antonio; López, María M.,

2015.

Evaluation of a real-time PCR and a loop-mediated isothermal amplification for detection of Xanthomonas arboricola pv. pruni in plant tissue samples.

Journal of Microbiological Methods.

112, S. 36-39.

Verfügbar unter: https://doi.org/10.1016/j.mimet.2015.03.005

Ziegler, Dominik; Pothier, Joël F.; Ardley, Julie; Kouakou Fossou, Romain; Pflüger, Valentin; de Meyer, Sofie; Vogel, Guido; Tonolla, Mauro; Howieson, John; Reeve, Wayne; Perret, Xavier,

2015.

Ribosomal protein biomarkers provide root nodule bacterial identification by MALDI-TOF MS.

Applied Microbiology and Biotechnology.

99(13), S. 5547-5562.

Verfügbar unter: https://doi.org/10.1007/s00253-015-6515-3