Publications of the Environmental Genomics and Systems Biology Research Group

De Maayer, Pieter; Chan, Wai-Yin; Martin, Douglas A.; Blom, Jochen; Venter, Stephanus N.; Duffy, Brion; Cowan, Don A.; Smits, Theo H. M.; Coutinho, Teresa A.,

2015.

Integrative conjugative elements of the ICEPan family play a potential role in Pantoea ananatis ecological diversification and antibiosis.

Frontiers in Microbiology.

6(576).

Available from: https://doi.org/10.21256/zhaw-1472

Palacio-Bielsa, Ana; López-Soriano, Pablo; Bühlmann, Andreas; van Doorn, Joop; Pham, Khanh; Cambra, Miguel A.; Berruete, Isabel M.; Pothier, Joël F.; Duffy, Brion; Olmos, Antonio; López, María M.,

2015.

Evaluation of a real-time PCR and a loop-mediated isothermal amplification for detection of Xanthomonas arboricola pv. pruni in plant tissue samples.

Journal of Microbiological Methods.

112, pp. 36-39.

Ziegler, Dominik; Pothier, Joël F.; Ardley, Julie; Kouakou Fossou, Romain; Pflüger, Valentin; de Meyer, Sofie; Vogel, Guido; Tonolla, Mauro; Howieson, John; Reeve, Wayne; Perret, Xavier,

2015.

Ribosomal protein biomarkers provide root nodule bacterial identification by MALDI-TOF MS.

Applied Microbiology and Biotechnology.

99(13), pp. 5547-5562.

Available from: https://doi.org/10.21256/zhaw-1649

Brankatschk, Kerstin; Kamber, Tim; Pothier, Joël F.; Duffy, Brion; Smits, Theo H.M.,

2014.

Transcriptional profile of Salmonella enterica subsp. enterica serovar Weltevreden during alfalfa sprout colonization.

Microbial Biotechnology.

7(6), pp. 528-544.

Available from: https://doi.org/10.21256/zhaw-1467

Ismail, Emadeldeen; Blom, Jochen; Bultreys, Alain; Ivanovic, Milan; Obradovic, Aleksa; van Doorn, Joop; Bergsma-Vlami, Maria; Maes, Martine; Willems, Anne; Duffy, Brion; Stockwell, Virginia O.; Smits, Theo H.M.; Pulawska, Joanna,

2014.

A novel plasmid pEA68 of Erwinia amylovora and the description of a new family of plasmids.

Archives of Microbiology.

196(12), pp. 891-899.

Available from: https://doi.org/10.21256/zhaw-3573

Weller-Stuart, Tania; Chan, Wai-Yin; Coutinho, Teresa A.; Venter, Stephanus N.; Smits, Theo H.M.; Duffy, Brion; Goszczynska, Teresa; Cowan, Don A.; de Maayer, Pieter,

2014.

Draft genome sequences for the onion center roth pathogen Pantoea ananatis PA4 and maize brown stalk rot pathogen P. ananatis BD442.

Genome Announcements.

2(4).

Available from: https://doi.org/10.21256/zhaw-1468

Bühlmann, Andreas; Dreo, Tanja; Rezzonico, Fabio; Pothier, Joël F.; Smits, Theo H. M.; Ravnikar, Maja; Frey, Jürg E.; Duffy, Brion,

2014.

Phylogeography and population structure of the biologically invasive phytopathogen Erwinia amylovora inferred using minisatellites.

Environmental Microbiology.

16(7), pp. 2112-2125.

van der Wolf, Jan M.; Nijhuis, Els H.; Kowalewska, Malgorzata J.; Saddler, Gerry S.; Parkinson, Neil; Elphinstone, John G.; Pritchard, Leighton; Toth, Ian K.; Lojkowska, Ewa; Potrykus, Marta; Waleron, Malgorzata; de Vos, Paul; Cleenwerck, Ilse; Pirhonen, Minna; Garlant, Linda; Hélias, Valérie; Pothier, Joël F.; Pflüger, Valentin; Duffy, Brion; Tsror, Leah; Manulis, Shula,

2014.

Dickeya solani sp. nov., a pectinolytic plant-pathogenic bacterium isolated from potato (Solanum tuberosum).

International Journal of Systematic and Evolutionary Microbiology.

64, pp. 768-774.

Smits, Theo H.M.; Guerrero-Prieto, V. M.; Hernandez-Escarcega, G.; Rezzonico, Fabio; Blom, J.; Goesmann, A.; Duffy, Brion; Stockwell, V. O.,

2014.

Comparative genomics of Erwinia amylovora isolates from Mexico[paper].

In:

XIII International Workshop on Fire Blight, Zurich, Switzerland, 2-5 July 2013.

International Society for Horticultural Science.

pp. 173-177.

Djaimurzina, A.; Umiralieva, Z.; Zharmukhamedova, G.; Born, Yannick; Bühlmann, A.; Rezzonico, Fabio,

2014.

Detection of the causative agent of fire blight – Erwinia amylovora (Burrill) Winslow et al. – in the southeast of Kazakhstan.

Acta Horticulturae.

1056, pp. 129-132.

Razinger, Jaka; Lutz, Matthias; Schroers, Hans-Josef; Palmisano, Marilena; Wohler, Christian; Urek, Gregor; Grunder, Jürg,

2014.

Direct plantlet inoculation with soil or insect-associated fungi may control cabbage root fly maggots.

Journal of Invertebrate Pathology.

120, pp. 59-66.

Rezzonico, Fabio,

2014.

Nanopore-based instruments as biosensors for future planetary missions.

Astrobiology.

14(4), pp. 344-351.

Bonaterra, Anna; Badosa, Esther; Rezzonico, Fabio; Duffy, Brion; Montesinos, Emilio,

2014.

Phenotypic comparison of clinical and plant-beneficial strains of Pantoea agglomerans.

International Microbiology.

17(2), pp. 81-90.

Available from: https://doi.org/10.21256/zhaw-1490

Almario, Juliana; Gobbin, Davide; Défago, Geneviève; Moënne-Loccoz, Yvan; Rezzonico, Fabio,

2014.

Prevalence of type III secretion system in effective biocontrol pseudomonads.

Research in Microbiology.

165(4), pp. 300-304.

Rezzonico, Fabio; Smits, Theo H.M.; Holliger, Eduard, eds.,

2014.

Proceedings of the 13th international workshop on fire blight.

13th International Workshop on Fire Blight, Zürich, 2-5 July 2013.

Leuven:

International Society for Horticultural Science.

.

ISBN 9789462610460.

Smits, Theo H. M.; Guerrero-Prieto, Víctor M.; Hernández-Escarcega, Germán; Blom, Jochen; Goesmann, Alexander; Rezzonico, Fabio; Duffy, Brion; Stockwell, Virginia O.,

2014.

Whole-genome sequencing of Erwinia amylovora strains from México detects SNPs in rpsL conferring streptomycin resistance and in the avrRpt2 effector altering host interactions.

Genome Announcements.

2(1).

Available from: https://doi.org/10.21256/zhaw-1491

Smits, Theo H. M.; Rezzonico, Fabio; López, Maria M.; Blom, Jochen; Goesmann, Alexander; Frey, Jürg E.; Duffy, Brion,

2013.

Phylogenetic position and virulence apparatus of the pear flower necrosis pathogen Erwinia piriflorinigrans CFBP 5888T as assessed by comparative genomics.

Systematic and Applied Microbiology.

36(7), pp. 449-456.

Vandroemme, Joachim; Cottyn, Bart; Pothier, Joël F.; Pflüger, Valentin; Duffy, Brion; Maes, Martine,

2013.

Xanthomonas arboricola pv. fragariae : what's in a name?.

Plant Pathology.

62(5), pp. 1123-1131.

Barbé, Silva; Llop, Pablo; Blom, Jochen; Cabrefiga, Jose; Goesmann, Alexander; Duffy, Brion; Montesinos, E.; Smits, Theo H.M.; López, M. M.,

2013.

Complete sequence of Erwinia piriflorinigrans plasmids pEPIR37 and pEPIR5 and role of pEPIR37 in pathogen virulence.

Plant Pathology.

62(4), pp. 786-798.

Socquet-Juglard, Didier; Duffy, Brion; Pothier, Joël F.; Christen, Danilo; Gessler, Cesare; Pattochi, Andrea,

2013.

Identification of a major QTL for Xanthomonas arboricola pv. pruni resistance in apricot.

Tree Genetics & Genomes.

9(2), pp. 409-421.

Available from: https://doi.org/10.21256/zhaw-1480