Publications of the Environmental Genomics and Systems Biology Research Group
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Flury, Pascale; Aellen, Nora; Ruffner, Beat; Péchy-Tarr, Maria; Fataar, Shakira; Metla, Zane; Dominguez-Ferreras, Ana; Bloemberg, Guido; Frey, Joachim; Goesmann, Alexander; Raaijmakers, Jos M; Duffy, Brion; Höfte, Monica; Blom, Jochen; Smits, Theo; Keel, Christoph; Maurhofer, Monika,
2016.
ISME Journal: Multidisciplinary Journal of Microbial Ecology.
10, pp. 2527-2542.
Available from: https://doi.org/10.1038/ismej.2016.5
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Wirthner-Bitterlin, Lisa; Reifler-Bächtiger, Martina; Palmisano, Marilena; Egloff, Sophia; Briner, Thomas; Capt, Simon; Graf, Roland F.,
2016.
Kleinsäuger mit Haarproben zuverlässig bestimmen.
Vierteljahrsschrift der Naturforschenden Gesellschaft in Zürich.
161(1), pp. 9-11.
Available from: https://doi.org/10.21256/zhaw-4288
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Smits, Theo H.M.; Rezzonico, Fabio; Blom, Jochen; Goesmann, Alexander; Abelli, Azzurra; Kron Morelli, Roberto; Vanneste, Joël L.; Duffy, Brion,
2015.
Draft genome sequence of the commercial biocontrol strain Pantoea agglomerans P10c.
Genome Announcements.
3(6).
Available from: https://doi.org/10.1128/genomeA.01448-15
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Smits, Theo H. M.; Pothier, Joël F.; Ruinelli, Michela; Blom, Jochen; Frasson, David; Koechli, Chantal; Fabbri, Carlotta; Brandl, Helmut; Duffy, Brion; Sievers, Martin,
2015.
Genome Announcements.
3(3).
Available from: https://doi.org/10.1128/genomeA.00616-15
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De Maayer, Pieter; Chan, Wai-Yin; Martin, Douglas A.; Blom, Jochen; Venter, Stephanus N.; Duffy, Brion; Cowan, Don A.; Smits, Theo H. M.; Coutinho, Teresa A.,
2015.
Frontiers in Microbiology.
6(576).
Available from: https://doi.org/10.3389/fmicb.2015.00576
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Palacio-Bielsa, Ana; López-Soriano, Pablo; Bühlmann, Andreas; van Doorn, Joop; Pham, Khanh; Cambra, Miguel A.; Berruete, Isabel M.; Pothier, Joël F.; Duffy, Brion; Olmos, Antonio; López, María M.,
2015.
Journal of Microbiological Methods.
112, pp. 36-39.
Available from: https://doi.org/10.1016/j.mimet.2015.03.005
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Ziegler, Dominik; Pothier, Joël F.; Ardley, Julie; Kouakou Fossou, Romain; Pflüger, Valentin; de Meyer, Sofie; Vogel, Guido; Tonolla, Mauro; Howieson, John; Reeve, Wayne; Perret, Xavier,
2015.
Ribosomal protein biomarkers provide root nodule bacterial identification by MALDI-TOF MS.
Applied Microbiology and Biotechnology.
99(13), pp. 5547-5562.
Available from: https://doi.org/10.1007/s00253-015-6515-3
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Brankatschk, Kerstin; Kamber, Tim; Pothier, Joël F.; Duffy, Brion; Smits, Theo H.M.,
2014.
Microbial Biotechnology.
7(6), pp. 528-544.
Available from: https://doi.org/10.1111/1751-7915.12104
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Ismail, Emadeldeen; Blom, Jochen; Bultreys, Alain; Ivanovic, Milan; Obradovic, Aleksa; van Doorn, Joop; Bergsma-Vlami, Maria; Maes, Martine; Willems, Anne; Duffy, Brion; Stockwell, Virginia O.; Smits, Theo H.M.; Pulawska, Joanna,
2014.
A novel plasmid pEA68 of Erwinia amylovora and the description of a new family of plasmids.
Archives of Microbiology.
196(12), pp. 891-899.
Available from: https://doi.org/10.1007/s00203-014-1028-5
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Weller-Stuart, Tania; Chan, Wai-Yin; Coutinho, Teresa A.; Venter, Stephanus N.; Smits, Theo H.M.; Duffy, Brion; Goszczynska, Teresa; Cowan, Don A.; de Maayer, Pieter,
2014.
Genome Announcements.
2(4).
Available from: https://doi.org/10.1128/genomeA.00750-14
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Bühlmann, Andreas; Dreo, Tanja; Rezzonico, Fabio; Pothier, Joël F.; Smits, Theo H. M.; Ravnikar, Maja; Frey, Jürg E.; Duffy, Brion,
2014.
Environmental Microbiology.
16(7), pp. 2112-2125.
Available from: https://doi.org/10.1111/1462-2920.12289
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van der Wolf, Jan M.; Nijhuis, Els H.; Kowalewska, Malgorzata J.; Saddler, Gerry S.; Parkinson, Neil; Elphinstone, John G.; Pritchard, Leighton; Toth, Ian K.; Lojkowska, Ewa; Potrykus, Marta; Waleron, Malgorzata; de Vos, Paul; Cleenwerck, Ilse; Pirhonen, Minna; Garlant, Linda; Hélias, Valérie; Pothier, Joël F.; Pflüger, Valentin; Duffy, Brion; Tsror, Leah; Manulis, Shula,
2014.
International Journal of Systematic and Evolutionary Microbiology.
64, pp. 768-774.
Available from: https://doi.org/10.1099/ijs.0.052944-0
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Smits, Theo H.M.; Guerrero-Prieto, V. M.; Hernandez-Escarcega, G.; Rezzonico, Fabio; Blom, J.; Goesmann, A.; Duffy, Brion; Stockwell, V. O.,
2014.
Comparative genomics of Erwinia amylovora isolates from Mexico [paper].
In:
XIII International Workshop on Fire Blight, Zurich, Switzerland, 2-5 July 2013.
International Society for Horticultural Science.
pp. 173-177.
Available from: https://doi.org/10.17660/ActaHortic.2014.1056.27
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Djaimurzina, A.; Umiralieva, Z.; Zharmukhamedova, G.; Born, Yannick; Bühlmann, A.; Rezzonico, Fabio,
2014.
Acta Horticulturae.
1056, pp. 129-132.
Available from: https://doi.org/10.17660/ActaHortic.2014.1056.18
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Razinger, Jaka; Lutz, Matthias; Schroers, Hans-Josef; Palmisano, Marilena; Wohler, Christian; Urek, Gregor; Grunder, Jürg,
2014.
Journal of Invertebrate Pathology.
120, pp. 59-66.
Available from: https://doi.org/10.1016/j.jip.2014.05.006
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2014.
Nanopore-based instruments as biosensors for future planetary missions.
Astrobiology.
14(4), pp. 344-351.
Available from: https://doi.org/10.1089/ast.2013.1120
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Bonaterra, Anna; Badosa, Esther; Rezzonico, Fabio; Duffy, Brion; Montesinos, Emilio,
2014.
Phenotypic comparison of clinical and plant-beneficial strains of Pantoea agglomerans.
International Microbiology.
17(2), pp. 81-90.
Available from: https://doi.org/10.2436/20.1501.01.210
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Almario, Juliana; Gobbin, Davide; Défago, Geneviève; Moënne-Loccoz, Yvan; Rezzonico, Fabio,
2014.
Prevalence of type III secretion system in effective biocontrol pseudomonads.
Research in Microbiology.
165(4), pp. 300-304.
Available from: https://doi.org/10.1016/j.resmic.2014.03.008
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Rezzonico, Fabio; Smits, Theo H.M.; Holliger, Eduard, eds.,
2014.
Proceedings of the 13th international workshop on fire blight.
13th International Workshop on Fire Blight, Zürich, 2-5 July 2013.
Leuven:
International Society for Horticultural Sciences.
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ISBN 9789462610460.
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Smits, Theo H. M.; Guerrero-Prieto, Víctor M.; Hernández-Escarcega, Germán; Blom, Jochen; Goesmann, Alexander; Rezzonico, Fabio; Duffy, Brion; Stockwell, Virginia O.,
2014.
Genome Announcements.
2(1).
Available from: https://doi.org/10.1128/genomeA.01229-13