Dr. Julija Pecerska

Projects

• Inferring the molecular evolutionary history with multiple-character indels: from theory to practice / Team member / ongoing
• Novel Markov chain Monte Carlo algorithms for Bayesian inference / Team member / completed
• Frequentist estimation of the evolutionary history of sequences with substitutions and indels / Team member / completed

Publications

Articles in scientific journal, peer-reviewed

• Jowkar, G., Pecerska, J., Maiolo, M., Gil, M., & Anisimova, M. (2022). ARPIP : ancestral sequence reconstruction with insertions and deletions under the poisson indel process. Systematic Biology, 72(2), 307–318. https://doi.org/10.1093/sysbio/syac050
• Pecerska, J., Kühnert, D., Meehan, C. J., Coscollá, M., de Jong, B. C., Gagneux, S., & Stadler, T. (2021). Quantifying transmission fitness costs of multi-drug resistant tuberculosis. Epidemics, 36(100471). https://doi.org/10.1016/j.epidem.2021.100471
• Anisimova, M., Pečerska, J., & Schaper, E. (2015). Statistical approaches to detecting and analyzing tandem repeats in genomic sequences. Frontiers in Bioengineering and Biotechnology, 3(31). https://doi.org/10.3389/fbioe.2015.00031
• Schaper, E., Korsunsky, A., Pečerska, J., Messina, A., Murri, R., Stockinger, H., Zoller, S., Xenarios, I., & Anisimova, M. (2015). TRAL : tandem repeat annotation library. Bioinformatics, 31(18), 3051–3053. https://doi.org/10.1093/bioinformatics/btv306

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