Dr. Joël Pothier

ZHAW Life Sciences und Facility Management
Institut für Umwelt und Natürliche Ressourcen
Einsiedlerstrasse 34
8820 Wädenswil

+41 (0) 58 934 53 21
joel.pothier@zhaw.ch

Berufserfahrung

Postdoktorand
Agroscope
09 / 2008 - 04 / 2013
Postdoktorand
CNRS
04 / 2008 - 07 / 2008

Netzwerk

Mitglied in Netzwerken

Dropsa (2014-2018)
NRP68 (2013-2016)
Q-Detect (2010-2013)
COST FA1104 (2013-2016)
COST 873 (2008-2012)
Swiss Group for Mass Spectrometry SGMS (since 2015)
Société Française de Phytopathologie SFP (2009-2015)
Swiss Society for Microbiology SGM-SSM (since 2010)
COST CA16107 (2016-2020)
COST CA16110 (2016-2020)
COST CA22158 MiCropBiomes (2023-2027)
COST CA22142 RootBenefit (2023-2027)

ORCID digital identifier

ORCID ID: 0000-0002-9604-7780

Projekte

Publikationen

Beiträge in wissenschaftlicher Zeitschrift, peer-reviewed

Orfei, B., Pothier, J., Scotti, L., Aceto, A., Moretti, C., Buonaurio, R., & Smits, T. (2026). Correction: Transcriptome analysis of Pseudomonas syringae pv. tomato DAPP-PG 215 in response to silver nanoparticles exposure. Frontiers in Microbiology, 17(1809727). https://doi.org/10.3389/fmicb.2026.1809727
Kalbermatten, C. L., Jordan, S., Pothier, J. F., Nägele, H.-J., Smits, T. H. M., & Merkle, W. (2026). Optimizing trickle-bed reactor performance for hydrogenotrophic methane production in power-to-methane systems. Process Biochemistry. https://doi.org/10.1016/j.procbio.2026.02.010
Jordan, S., Pothier, J. F., Rezzonico, F., Kvitko, B. H., Coutinho, T. A., & Smits, T. H. M. (2026). Kosakonia beeri sp. nov. and Phytobacter cepae sp. nov. isolated from onion (Allium cepa). International Journal of Systematic and Evolutionary Microbiology, 76(1). https://doi.org/10.1099/ijsem.0.007043
Orfei, B., Pothier, J. F., Scotti, L., Aceto, A., Moretti, C., Buonaurio, R., & Smits, T. H. M. (2026). Transcriptome analysis of Pseudomonas syringae pv. tomato DAPP-PG 215 in response to silver nanoparticles exposure. Frontiers in Microbiology, 16(1714857). https://doi.org/10.3389/fmicb.2025.1714857
Makechemu, M., Goto, Y., Schmid, M. W., Zbinden, H., Widrig, V., Kaufmann, M., Pothier, J. F., Keller, B., & Zipfel, C. (2025). Chitin soil amendment triggers systemic plant disease resistance through enhanced pattern‐triggered immunity. Plant Biotechnology Journal, 23(11), 5032–5044. https://doi.org/10.1111/pbi.70282
Jordan, S., Pothier, J. F., de Maayer, P., Broders, K., Kvitko, B. H., Coutinho, T. A., & Smits, T. (2025). Design of genus-specific semi-nested primers for simple and accurate identification of Enterobacter strains. BMC Microbiology, 25(1), 456. https://doi.org/10.1186/s12866-025-04175-1
Zhao, X., Overbeek, L. V., Burgess, C. M., Holden, N., Brennan, F., Johannessen, G. S., Allende, A., Höfte, M., Cottyn, B., Pothier, J. F., Schikora, A., & Uyttendaele, M. (2025). Human pathogenic microorganisms in fresh produce production : lessons learned when plant science meets food safety. Journal of Food Protection, 88(7), 100551. https://doi.org/10.1016/j.jfp.2025.100551
Dia, N. C., Cottyn, B., Aspin, A., Studer, B., Smits, T. H. M., & Pothier, J. F. (2025). Bacterial leaf spot of Hydrangea : on a “new old” disease and the importance of diagnostic specificity to reduce cross-reactivity and improve surveillance. PhytoFrontiers, 5(2), 138–143. https://doi.org/10.1094/PHYTOFR-10-24-0119-FI
Garcia, E., Soares, F., Rodrigues, C. O., Trovão, J., Pothier, J. F., Camelo, A., Espírito Santo, C., Dragnev, D., Petrova, E., Costa, J., & Bobev, S. (2024). Expansion of the host range of Xanthomonas euroxanthea : first occurence in sunflower in Bulgaria. Plant Disease, 109(4), 810–815. https://doi.org/10.1094/PDIS-08-24-1691-SC
Pas, C., Fieseler, L., Pothier, J. F., & Briers, Y. (2024). Isolation, characterization, and receptor-binding protein specificity of phages PAS7, PAS59 and PAS61 infecting Shiga toxin-producing Escherichia coli O103 and O146. Scientific Reports, 14(26050). https://doi.org/10.1038/s41598-024-77463-x
Dimaria, G., Mosca, A., Russo, M., Cubero, J., Pothier, J. F., Koebnik, R., & Catara, V. (2024). Draft genome sequence of Xanthomonas arboricola pv. pruni PVCT 262.1 isolated from Prunus dulcis in Italy. Microbiology Resource Announcements, 13(7), e0027324. https://doi.org/10.1128/mra.00273-24
Kaufmann, M., Li, L., Van Poucke, C., Rhyner, N., De Tender, C., Uyttendaele, M., Heyndrickx, M., Zipfel, C., Pothier, J. F., & Bart, C. (2024). Soil type and associated microbiomes influences chitin’s growth-promotion effect in lettuce. Phytobiomes Journal, 8(3), 248–261. https://doi.org/10.1094/PBIOMES-12-23-0132-R
Costa, J., Pothier, J. F., Bosis, E., Boch, J., Kölliker, R., & Koebnik, R. (2023). A community-curated DokuWiki resource on diagnostics, diversity, pathogenicity and genetic control of Xanthomonads. Molecular Plant-Microbe Interactions, 37(3), 347–353. https://doi.org/10.1094/MPMI-11-23-0184-FI
Kałużna, M., Prokić, A., Obradović, A., Weldon, W. A., Stockwell, V. O., & Pothier, J. F. (2023). Specific and sensitive detection tools for Xanthomonas arboricola pv. corylina, the causal agent of bacterial blight of hazelnut, developed with comparative genomics. Frontiers in Plant Science, 14(1254107). https://doi.org/10.3389/fpls.2023.1254107
Orfei, B., Pothier, J. F., Fenske, L., Blom, J., Moretti, C., Buonaurio, R., & Smits, T. H. M. (2023). Race-specific genotypes of Pseudomonas syringae pv. tomato are defined by the presence of mobile DNA elements within the genome. Frontiers in Plant Science, 14(1197706). https://doi.org/10.3389/fpls.2023.1197706
Li, L., Kaufmann, M., Makechemu, M., Van Poucke, C., De Keyser, E., Uyttendaele, M., Zipfel, C., Cottyn, B., & Pothier, J. F. (2023). Assessment of transcriptional reprogramming of lettuce roots in response to chitin soil amendment. Frontiers in Plant Science, 14(1158068). https://doi.org/10.3389/fpls.2023.1158068
Arend, L. N. V. S., Bergamo, R., Rocha, F. B., Bail, L., Ito, C., Baura, V. A., Balsanelli, E., Pothier, J. F., Rezzonico, F., Pilonetto, M., Smits, T. H. M., & Tuon, F. F. (2023). Dissemination of NDM-producing bacteria in Southern Brazil. Diagnostic Microbiology and Infectious Disease, 106(2), 115930. https://doi.org/10.1016/j.diagmicrobio.2023.115930
Pothier, J. F., Bolt, V., Arn, F., Frasson, D., Rhyner, N., & Sievers, M. (2023). High-quality draft genome sequence of Streptomyces albidoflavus CCOS 2040, isolated from a Swiss soil sample. Microbiology Resource Announcements, 12(3), e01225–22. https://doi.org/10.1128/mra.01225-22
Knecht, L. E., Born, Y., Pelludat, C., Pothier, J. F., Smits, T. H. M., Loessner, M. J., & Fieseler, L. (2022). Spontaneous resistance of Erwinia amylovora against bacteriophage Y2 affects infectivity of multiple phages. Frontiers in Microbiology, 13(908346). https://doi.org/10.3389/fmicb.2022.908346
Sulja, A., Pothier, J. F., Blom, J., Moretti, C., Buonaurio, R., Rezzonico, F., & Smits, T. H. M. (2022). Comparative genomics to examine the endophytic potential of Pantoea agglomerans DAPP-PG 734. BMC Genomics, 23(742). https://doi.org/10.1186/s12864-022-08966-y
Schmautz, Z., Walser, J.-C., Espinal, C. A., Gartmann, F., Scott, B., Pothier, J. F., Frossard, E., Junge, R., & Smits, T. H. M. (2022). Microbial diversity across compartments in an aquaponic system and its connection to the nitrogen cycle. Science of the Total Environment, 852(158426). https://doi.org/10.1016/j.scitotenv.2022.158426
Dia, N. C., Cottyn, B., Blom, J., Smits, T. H. M., & Pothier, J. F. (2022). Differentiation of the Xanthomonas hortorum – Xanthomonas hydrangeae species complex using sensitive and selective LAMP assays. Frontiers in Agronomy, 4(898778). https://doi.org/10.3389/fagro.2022.898778
Silva, K. G., Martins, L., Teixeira, M., Pothier, J. F., & Tavares, F. (2022). DNA markers for detection and genotyping of Xanthomonas euroxanthea. Microorganisms, 10(6), 1078. https://doi.org/10.3390/microorganisms10061078
Kałużna, M., & Pothier, J. F. (2022). Complete genome sequence data of two Xanthomonas arboricola strains isolated from blueberry plants displaying bacterial leaf blight in Poland. Phytopathology, 112(8), 1814–1818. https://doi.org/10.1094/PHYTO-11-21-0484-A
Ruinelli, M., Blom, J., Smits, T. H. M., & Pothier, J. F. (2022). Comparative genomics of Prunus-associated members of the Pseudomonas syringae species complex reveals traits supporting co-evolution and host adaptation. Frontiers in Microbiology, 13(804681). https://doi.org/10.3389/fmicb.2022.804681
Dia, N. C., Morinière, L., Cottyn, B., Bernal, E., Jacobs, Jonathan M., Koebnik, R., Osdaghi, E., Potnis, N., & Pothier, J. F. (2022). Xanthomonas hortorum – beyond gardens : current taxonomy, genomics, and virulence repertoires. Molecular Plant Pathology, 23(5), 597–621. https://doi.org/10.1111/mpp.13185
Hakalová, E., Čechová, J., Tekielska, D. A., Eichmeier, A., & Pothier, J. F. (2022). Combined effect of thyme and clove phenolic compounds on Xanthomonas campestris pv. campestris and biocontrol of black rot disease on cabbage seeds. Frontiers in Microbiology, 13. https://doi.org/10.3389/fmicb.2022.1007988
Pothier, J. F., Kałużna, M., Prokić, A., Obradovic, A., & Rezzonico, F. (2021). Complete genome and plasmid sequence data of three Xanthomonas arboricola pv. corylina strains, the bacterium responsible for bacterial blight of hazelnut. Phytopathology, 112(4), 956–960. https://doi.org/10.1094/PHYTO-08-21-0356-A
Dia, N. C., Van Vaerenbergh, J., Van Malderghem, C., Blom, J., Smits, T. H. M., Cottyn, B., & Pothier, J. F. (2021). Xanthomonas hydrangeae sp. nov., a novel plant pathogen isolated from Hydrangea arborescens. International Journal of Systematic and Evolutionary Microbiology, 71(12). https://doi.org/10.1099/ijsem.0.005163
Kałużna, M., Fischer‐Le Saux, M., Pothier, J., Jacques, M.-A., Obradović, A., Tavares, F., & Stefani, E. (2021). Xanthomonas arboricola pv. juglandis and pv. corylina: Brothers or distant relatives? : genetic clues, epidemiology, and insights for disease management. Molecular Plant Pathology, 22(12), 1481–1499. https://doi.org/10.1111/mpp.13073
Cottyn, B., De Paepe, B., Dia, N., Van Malderghem, C., Pothier, J., & Van Vaerenbergh, J. (2021). First report of bacterial leaf spot of Hydrangea in retail nurseries in Belgium caused by strains assigned to a new Xanthomonas hortorum clade. New Disease Reports, 43(2), e12008. https://doi.org/10.1002/ndr2.12008
Catara, V., Cubero, J., Pothier, J., Bosis, E., Bragard, C., Đermić, E., Holeva, M. C., Jacques, M.-A., Petter, F., Pruvost, O., Robène, I., Studholme, D. J., Tavares, F., Vicente, J. G., Koebnik, R., & Costa, J. (2021). Trends in molecular diagnosis and diversity studies for phytosanitary regulated Xanthomonas. Microorganisms, 9(4), 862. https://doi.org/10.3390/microorganisms9040862
Fernandes, C., Martins, L., Teixeira, M., Blom, J., Pothier, J., Fonseca, N. A., & Tavares, F. (2021). Comparative genomics of Xanthomonas euroxanthea and Xanthomonas arboricola pv. juglandis strains isolated from a single walnut host tree. Microorganisms, 9(3), 624. https://doi.org/10.3390/microorganisms9030624
Arn, F., Frasson, D., Kroslakova, I., Rezzonico, F., Pothier, J., Riedl, R., & Sievers, M. (2020). Isolation and identification of actinomycetes strains from Switzerland and their biotechnological potential. Chimia, 74(5), 382–390. https://doi.org/10.2533/chimia.2020.382
Puławska, J., Kałużna, M., Warabieda, W., Pothier, J. F., Gétaz, M., & van der Wolf, J. M. (2020). Transcriptome analysis of Xanthomonas fragariae in strawberry leaves. Scientific Reports, 10(20582). https://doi.org/10.1038/s41598-020-77612-y
Dia, N. C., Rezzonico, F., Smits, T. H. M., & Pothier, J. F. (2020). Complete or high-quality draft genome sequences of six Xanthomonas hortorum strains sequenced with short- and long-read technologies. Microbiology Resource Announcements, 9(41), e00828–20. https://doi.org/10.1128/MRA.00828-20
Martins, L., Fernandes, C., Blom, J., Dia, N. C., Pothier, J. F., & Tavares, F. (2020). Xanthomonas euroxanthea sp. nov. : a new xanthomonad species including pathogenic and non-pathogenic strains of walnut. International Journal of Systematic and Evolutionary Microbiology, 70(12), 6024–6031. https://doi.org/10.1099/ijsem.0.004386
Gétaz, M., Puławska, J., Smits, T. H. M., & Pothier, J. F. (2020). Host–pathogen interactions between Xanthomonas fragariae and its host Fragaria × ananassa investigated with a dual RNA-Seq analysis. Microorganisms, 8(8), 1253. https://doi.org/10.3390/microorganisms8081253
Gétaz, M., Blom, J., Smits, T. H. M., & Pothier, J. F. (2020). Comparative genomics of Xanthomonas fragariae and Xanthomonas arboricola pv. fragariae reveals intra- and interspecies variations. Phytopathology Research, 2020(2), 17. https://doi.org/10.1186/s42483-020-00061-y
Rothen, J., Sapugahawatte, D. N., Li, C., Lo, N., Vogel, G., Foucault, F., Pflüger, V., Pothier, J., Blom, J., Daubenberger, C., & Ip, M. (2020). A simple, rapid typing method for Streptococcus agalactiae based on ribosomal subunit proteins by MALDI-TOF MS. Scientific Reports, 10(8788). https://doi.org/10.1038/s41598-020-65707-5
Fossou, R. K., Pothier, J. F., Zézé, A., & Perret, X. (2020). Bradyrhizobium ivorense sp. nov. as a potential local bioinoculant for Cajanus cajan cultures in Côte d’Ivoire. International Journal of Systematic and Evolutionary Microbiology, 70(2), 1421–1430. https://doi.org/10.1099/ijsem.0.003931
Rutz, D., Frasson, D., Sievers, M., Blom, J., Rezzonico, F., Pothier, J. F., & Smits, T. H. M. (2019). High-quality draft genome sequence of Pseudomonas reidholzensis strain CCOS 865T. Microbiology Resource Announcements, 8(3). https://doi.org/10.1128/MRA.01502-18
Rothen, J., Pothier, J. F., Foucault, F., Blom, J., Nanayakkara, D., Li, C., Ip, M., Tanner, M., Vogel, G., Pflüger, V., & Daubenberger, C. A. (2019). Subspecies typing of Streptococcus agalactiae based on ribosomal subunit protein mass variation by MALDI-TOF MS. Frontiers in Microbiology, 10(471). https://doi.org/10.3389/fmicb.2019.00471
Luedin, S., Liechti, N., Cox, R. P., Danza, F., Frigaard, N.-U., Posth, N., Pothier, J. F., Roman, S., Storelli, N., Wittwer, M., & Tonolla, M. (2019). Draft genome sequence of Chromatium okenii isolated from the stratified alpine Lake Cadagno. Scientific Reports, 9(1), 1936. https://doi.org/10.1038/s41598-018-38202-1
Ruinelli, M., Blom, J., Smits, T., & Pothier, J. (2019). Comparative genomics and pathogenicity potential of members of the Pseudomonas syringae species complex on Prunus spp. BMC Genomics, 20(172). https://doi.org/10.1186/s12864-019-5555-y
Smits, T. H. M., Rezzonico, F., Frasson, D., Vesga, P., Vacheron, J., Blom, J., Pothier, J. F., Keel, C., Maurhofer, M., & Sievers, M. (2019). Updated genome sequence and annotation for the full genome of Pseudomonas protegens CHA0. Microbiology Resource Announcements, 8(39). https://doi.org/10.1128/MRA.01002-19
Rutz, D., Frasson, D., Sievers, M., Blom, J., Rezzonico, F., Pothier, J. F., & Smits, T. H. M. (2019). Comparative genomic analysis of the biotechnological potential of the novel species Pseudomonas wadenswilerensis CCOS 864T and Pseudomonas reidholzensis CCOS 865T. Diversity, 2019(11), 204. https://doi.org/10.3390/d11110204
Schneeberger, P. H. H., Fuhrimann, S., Becker, S. L., Pothier, J. F., Duffy, B., Beuret, C., Frey, J. E., & Utzinger, J. (2019). Qualitative microbiome profiling along a wastewater system in Kampala, Uganda. Scientific Reports, 9(1), 17334. https://doi.org/10.1038/s41598-019-53569-5
Luedin, S. M., Storelli, N., Danza, F., Roman, S., Wittwer, M., Pothier, J. F., & Tonolla, M. (2019). Mixotrophic growth under micro-oxic conditions in the purple sulfur bacterium “Thiodictyon syntrophicum”. Frontiers in Microbiology, 10(384). https://doi.org/10.3389/fmicb.2019.00384
Gétaz, M., Baeyen, S., Blom, J., Maes, M., Cottyn, B., & Pothier, J. F. (2018). High-quality draft genome sequences of five xanthomonas arboricola pv. fragariae isolates. Genome Announcements, 6(7). https://doi.org/10.1128/genomeA.01585-17
Knecht, L. E., Born, Y., Pothier, J. F., Loessner, M. J., & Fieseler, L. (2018). Complete genome sequences of erwinia amylovora phages vB_EamP-S2 and vB_EamM-Bue1. Microbiology Resource Announcements, 7(3). https://doi.org/10.1128/MRA.00891-18
Luedin, S. M., Pothier, J. F., Danza, F., Storelli, N., Frigaard, N.-U., Wittwer, M., & Tonolla, M. (2018). Complete genome sequence of “Thiodictyon syntrophicum” sp. nov. strain Cad16T, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake Cadagno. Standards in Genomic Sciences, 13(14). https://doi.org/10.1186/s40793-018-0317-z
Gétaz, M., Krijger, M., Rezzonico, F., Smits, T., van der Wolf, J. M., & Pothier, J. F. (2018). Genome-based population structure analysis of the strawberry plant pathogen Xanthomonas fragariae reveals two distinct groups that evolved independently before its species description. Microbial Genomics, 4(7). https://doi.org/10.1099/mgen.0.000189
Rutz, D., Frasson, D., Sievers, M., Blom, J., Rezzonico, F., Pothier, J., & Smits, T. (2018). High-quality draft genome sequence of pseudomonas wadenswilerensis CCOS 864T. Microbiology Resource Announcements, 7(16). https://doi.org/10.1128/MRA.01059-18
Fernandes, C., Blom, J., Pothier, J. F., & Tavares, F. (2018). High-quality draft genome sequence of xanthomonas arboricola pv. juglandis CPBF 1521, isolated from leaves of a symptomatic walnut tree in Portugal without a past of phytosanitary treatment. Microbiology Resource Announcements, 7(16). https://doi.org/10.1128/MRA.00887-18
Fernandes, C., Blom, J., Pothier, J. F., & Tavares, F. (2018). High-Quality draft genome sequence of xanthomonas sp. strain CPBF 424, a walnut-pathogenic strain with atypical features. Microbiology Resource Announcements, 7(15). https://doi.org/10.1128/MRA.00921-18
Normand, P., Nouioui, I., Pujic, P., Fournier, P., Dubost, A., Schwob, G., Klenk, H.-P., Nguyen, A., Abrouk, D., Herrera-Belaroussi, A., Pothier, J. F., Pflüger, V., & Fernandez, M. P. (2018). Frankia canadensis sp. nov., isolated from root nodules of Alnus incana subspecies rugosa. International Journal of Systematic and Evolutionary Microbiology, 68, 3001–3011. https://doi.org/10.1099/ijsem.0.002939
Rezzonico, F., Duffy, B., Smits, T. H. M., & Pothier, J. F. (2017). Erwinia species identification using matrix-assisted laser desorption ionization-time of flight mass spectrometry. Journal of Plant Pathology, 99(Special issue), 121–129. https://doi.org/10.4454/jpp.v99i0.3916
Gétaz, M., Bühlmann, A., Schneeberger, P. H. H., Van Malderghem, C., Duffy, B., Maes, M., Pothier, J. F., & Cottyn, B. (2017). A diagnostic tool for improved detection of Xanthomonas fragariae using a rapid and highly specific LAMP assay designed with comparative genomics. Plant Pathology, 66(7), 1094–1102. https://doi.org/10.1111/ppa.12665
Kamber, T., Pothier, J., Pelludat, C., Rezzonico, F., Duffy, B., & Smits, T. (2017). Role of the type VI secretion systems during disease interactions of Erwinia amylovora with its plant host. BMC Genomics, 16(628), 1–12. https://doi.org/10.1186/s12864-017-4010-1
Gétaz, M., van der Wolf, J., Blom, J., & Pothier, J. F. (2017). Complete genome sequences of three isolates of Xanthomonas fragariae, the bacterium responsible for angular leaf spots on strawberry plants. Genome Announcements, 5(32). https://doi.org/10.1128/genomeA.00642-17
Ruinelli, M., Blom, J., & Pothier, J. F. (2017). Complete genome sequence of Pseudomonas viridiflava CFBP 1590: isolated from diseased cherry in France. Genome Announcements, 5(30). https://doi.org/10.1128/genomeA.00662-17
Rothen, J., Schindler, T., Pothier, J. F., Younan, M., Certa, U., Daubenberger, C., Pflüger, V., & Jores, J. (2017). Draft genome sequences of seven Streptococcus agalactiae strains isolated from Camelus dromedarius at the horn of Africa. Genome Announcements, 5(28). https://doi.org/10.1128/genomeA.00525-17
Schneeberger, P. H. H., Pothier, J. F., Bühlmann, A., Duffy, B., Beuret, C., Utzinger, J., & Frey, J. E. (2017). Development and evaluation of a bioinformatics approach for designing molecular assays for viral detection. Plos One, 12(5). https://doi.org/10.1371/journal.pone.0178195
Konavko, D., Malchev, S., Pothier, J. F., Jundzis, M., Moročko-Bičevska, I., & Rezzonico, F. (2016). Diversity and host range of Pseudomonas in fruit tree species in Latvia. Acta Horticulturae, 1149, 25–30. https://doi.org/10.17660/ActaHortic.2016.1149.5
Kałużna, M., Willems, A., Pothier, J. F., Ruinelli, M., Sobiczewski, P., & Puławska, J. (2016). Pseudomonas cerasi sp. nov. (non Griffin, 1911) isolated from diseased tissue of cherry. Systematic and Applied Microbiology, 39(6), 370–377. https://doi.org/10.1016/j.syapm.2016.05.005
Schneeberger, P. H. H., Becker, S. L., Pothier, J. F., Duffy, B., N’Goran, E. K., Beuret, C., Frey, J. E., & Utzinger, J. (2016). Metagenomic diagnostics for the simultaneous detection of multiple pathogens in human stool specimens from Côte d’Ivoire : a proof-of-concept study. Infection, Genetics and Evolution, 40, 389–397. https://doi.org/10.1016/j.meegid.2015.08.044
Ruinelli, M., Schneeberger, P. H. H., Ferrante, P., Bühlmann, A., Scortichini, M., Vanneste, J. L., Duffy, B., & Pothier, J. F. (2016). Comparative genomics-informed design of two LAMP detection assays for detection of the kiwifruit pathogen Pseudomonas syringae pv. actinidiae and discrimination of isolates belonging to the pandemic biovar 3. Plant Pathology, 66(1), 140–149. https://doi.org/10.1111/ppa.12551
Puławska, J., Kuzmanović, N., Willems, A., & Pothier, J. F. (2016). Pararhizobium polonicum sp. nov. isolated from tumors on stone fruit rootstocks. Systematic and Applied Microbiology, 39(3), 164–169. https://doi.org/10.1016/j.syapm.2016.03.002
Kamber, T., Buchmann, J. P., Pothier, J., Smits, T., Wicker, T., & Duffy, B. (2016). Fire blight disease reactome : RNA-seq transcriptional profile of apple host plant defence responses to Erwinia amylovora pathogen infection. Scientific Reports, 6(21600). https://doi.org/10.1038/srep21600
Smits, T. H. M., Pothier, J. F., Ruinelli, M., Blom, J., Frasson, D., Koechli, C., Fabbri, C., Brandl, H., Duffy, B., & Sievers, M. (2015). Complete genome sequence of the cyanogenic phosphate-solubilizing Pseudomonas sp. strain CCOS 191 : a close relative of Pseudomonas mosseli. Genome Announcements, 3(3). https://doi.org/10.1128/genomeA.00616-15
Palacio-Bielsa, A., López-Soriano, P., Bühlmann, A., van Doorn, J., Pham, K., Cambra, M. A., Berruete, I. M., Pothier, J. F., Duffy, B., Olmos, A., & López, M. M. (2015). Evaluation of a real-time PCR and a loop-mediated isothermal amplification for detection of Xanthomonas arboricola pv. pruni in plant tissue samples. Journal of Microbiological Methods, 112, 36–39. https://doi.org/10.1016/j.mimet.2015.03.005
Ziegler, D., Pothier, J. F., Ardley, J., Kouakou Fossou, R., Pflüger, V., de Meyer, S., Vogel, G., Tonolla, M., Howieson, J., Reeve, W., & Perret, X. (2015). Ribosomal protein biomarkers provide root nodule bacterial identification by MALDI-TOF MS. Applied Microbiology and Biotechnology, 99(13), 5547–5562. https://doi.org/10.1007/s00253-015-6515-3
Brankatschk, K., Kamber, T., Pothier, J. F., Duffy, B., & Smits, T. H. M. (2014). Transcriptional profile of Salmonella enterica subsp. enterica serovar Weltevreden during alfalfa sprout colonization. Microbial Biotechnology, 7(6), 528–544. https://doi.org/10.1111/1751-7915.12104
Bühlmann, A., Dreo, T., Rezzonico, F., Pothier, J. F., Smits, T. H. M., Ravnikar, M., Frey, J. E., & Duffy, B. (2014). Phylogeography and population structure of the biologically invasive phytopathogen Erwinia amylovora inferred using minisatellites. Environmental Microbiology, 16(7), 2112–2125. https://doi.org/10.1111/1462-2920.12289
van der Wolf, J. M., Nijhuis, E. H., Kowalewska, M. J., Saddler, G. S., Parkinson, N., Elphinstone, J. G., Pritchard, L., Toth, I. K., Lojkowska, E., Potrykus, M., Waleron, M., de Vos, P., Cleenwerck, I., Pirhonen, M., Garlant, L., Hélias, V., Pothier, J. F., Pflüger, V., Duffy, B., et al. (2014). Dickeya solani sp. nov., a pectinolytic plant-pathogenic bacterium isolated from potato (Solanum tuberosum). International Journal of Systematic and Evolutionary Microbiology, 64, 768–774. https://doi.org/10.1099/ijs.0.052944-0
Vandroemme, J., Cottyn, B., Pothier, J. F., Pflüger, V., Duffy, B., & Maes, M. (2013). Xanthomonas arboricola pv. fragariae : what’s in a name? Plant Pathology, 62(5), 1123–1131. https://doi.org/10.1111/ppa.12028
Socquet-Juglard, D., Duffy, B., Pothier, J. F., Christen, D., Gessler, C., & Pattochi, A. (2013). Identification of a major QTL for Xanthomonas arboricola pv. pruni resistance in apricot. Tree Genetics & Genomes, 9(2), 409–421. https://doi.org/10.1007/s11295-012-0562-z
Bühlmann, A., Pothier, F., Rezzonico, F., Smits, T. H. M., Andreou, M., Boonham, N., Duffy, B., & Frey, J. E. (2013). Erwinia amylovora loop-mediated isothermal amplification (LAMP) assay for rapid pathogen detection and on-site diagnosis of fire blight. Journal of Microbiological Methods, 92(3), 332–339. https://doi.org/10.1016/j.mimet.2012.12.017
Socquet-Juglard, D., Kamber, T., Pothier, J. F., Christen, D., Gessler, C., Duffy, B., & Patocchi, A. (2013). Comparative RNA-Seq analysis of early-infected peach leaves by the invasive phytopathogen Xanthomonas arboricola pv. pruni. Plos One, 8(1). https://doi.org/10.1371/journal.pone.0054196
Bühlmann, A., Pothier, J. F., Tomlinson, J. A., Frey, J. F., Boonham, N., Smits, T. H. M., & Duffy, B. (2012). Genomics-informed design of loop-mediated isothermal amplification for detection of phytopathogenic Xanthomonas arboricola pv. pruni at the intraspecific level. Plant Pathology, 62(2), 475–484. https://doi.org/10.1111/j.1365-3059.2012.02654.x

Schriftliche Konferenzbeiträge, peer-reviewed

Kaufmann, M., Schüle, M., Smits, T., & Pothier, J. (2020). Typing plasmids with distributed sequence representation [Conference paper]. In F.-P. Schilling & T. Stadelmann (Eds.), Artificial Neural Networks in Pattern Recognition (pp. 200–210). Springer. https://doi.org/10.1007/978-3-030-58309-5_16
Kałużna, M., Willems, A., Pothier, J. F., Ruinelli, M., Sobiczewski, P., & Puławska, J. (2016). Characterization and genetic diversity of causal agent of stone fruit bacterial canker Pseudomonas cerasi : a new pathogen of cherry [Conference paper]. II International Workshop on Bacterial Diseases of Stone Fruits and Nuts, 1149, 9–14. https://doi.org/10.17660/ActaHortic.2016.1149.2

Weitere Publikationen

Pothier, J. F. (2024). Viren-Diagnostik für den Gemüsesektor : frühzeitige Viruserkennung dank der Kombination molekularer Methoden. IUNR Magazin, 2024(01), 22–23. https://doi.org/10.21256/zhaw-30617
Aspin, A., Cole, J., & Pothier, J. (2023). PM 7/65 (2) Xanthomonas fragariae. Wiley. https://doi.org/10.1111/epp.12916
Costa, J., Pothier, J. F., Boch, J., Stefani, E., & Koebnik, R. (2022). Integrating science on Xanthomonas and Xylella for integrated plant disease management. Microorganisms, 11(1), 6. https://doi.org/10.3390/microorganisms11010006
Stefani, E., Loreti, S., Costa, J., Cunty, A., & Pothier, J. F. (2021). PM 7/120 (2) Pseudomonas syringae pv. actinidiae. Wiley. https://doi.org/10.1111/epp.12782
Costa, J., Pothier, J. F., Boch, J., Stefani, E., Jacques, M.-A., Catara, V., & Koebnik, R. (2021). Integrating science on Xanthomonadaceae for sustainable plant disease management in Europe. Molecular Plant Pathology, 22(12), 1461–1463. https://doi.org/10.1111/mpp.13150
Saponari, M., Gétaz, M., Palkovics, L., Kuzmanović, N., Puławska, J., Ruinelli, M., Pothier, J., Obradović, A., Boscia, D., Végh, A., & Kałużna, M. (2017). Bacterial diseases. In J. Quero-García, A. Iezzoni, J. Puławska, & G. Lang (Eds.), Cherries : botany, production and uses. CAB International.

Forschungsdaten

Smits, Theo H. M.; Pothier, Joël F., 2018. Diversity of Xanthomonas fragariae with MLVA & CRISPR. European Nucleotide Archive. Verfügbar unter: https://www.ebi.ac.uk/ena/browser/view/PRJEB25730
Dia, Nay C.; Van Vaerenbergh, Johan; Van Malderghem, Cinzia; Blom, Jochen; Smits, Theo H. M.; Cottyn, Bart; Pothier, Joël F., 2021. Complete genome sequences of four Xanthomonas hortorum species level clade strains sequenced with short- and long-read technologies. European Nucleotide Archive. Verfügbar unter: https://www.ebi.ac.uk/ena/browser/view/PRJEB38813
Fernandes, Camila; Blom, Jochen; Pothier, Joël F.; Tavares, Fernando, 2018. High-quality draft genome sequences of distinct Xanthomonas spp. isolated from a single walnut tree host. European Nucleotide Archive. Verfügbar unter: https://www.ebi.ac.uk/ena/browser/view/PRJEB27248
Dia, Nay C.; Rezzonico, Fabio; Smits, Theo H. M.; Pothier, Joël F., 2020. Complete or high-quality draft genome sequences of six Xanthomonas hortorum strains sequenced with short- and long-read technologies. European Nucleotide Archive. Verfügbar unter: https://www.ebi.ac.uk/ena/browser/view/PRJEB38812
Gétaz, Michael; Puławska, Joanna; Smits, Theo H.M.; Pothier, Joël F., 2020. Host-pathogen interactions between Xanthomonas fragariae and its host Fragaria × ananassa investigated with a dual RNA-seq analysis. Gene Expression Omnibus. Verfügbar unter: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE150636

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