ACDC – Artificial Cells with Distributed Cores to Decipher Protein Function

Auf einen Blick

Projektleiter/in : Prof. Dr. Rudolf Marcel Füchslin
Stellv. Projektleiter/in : Dr. Dandolo Flumini
Projektteam : Dr. Johannes Josef Schneider, Mathias Weyland
Projektvolumen : CHF 730'000
Projektstatus : abgeschlossen
Drittmittelgeber : EU und andere Internationale Programme (Horizon 2020 / Projekt Nr. 824060)
Kontaktperson : Rudolf Marcel Füchslin

Beschreibung

Das Projekt implementiert ein der Biologie nachempfundenen chemischen Prozessmanagements durch Gebrauch verschiedener Softmatter- und Mikrofluidikstrukturen. Der ZHAW fällt die Aufgabe der Realisierung eines zughörigen «chemischen Compilers» zu. Die spezielle Herausforderung liegt im Zusammenspiel abstrakter Mathematik und realer Chemie.

Publikationen

Schneider, Johannes Josef; Barrow, David Anthony; Li, Jin; Weyland, Mathias; Flumini, Dandolo; Eggenberger Hotz, Peter; Füchslin, Rudolf Marcel,

2023.

Bidisperse extension of the kissing number problem.

In:

28th International Conference on Statistical Physics (Statphys28), Tokyo, Japan, 7-11 August 2023.
Weyland, Mathias S.; Flumini, Dandolo; Schneider, Johannes J.; Faggian, Alessia; Patiño Diaz, Aitor; Füchslin, Rudolf Marcel,

2023.

A chemical compiler for the synthesis of branched oligomers on standardized chemical reaction structures [Paper].

In:

ALIFE 2023: Ghost in the Machine : Proceedings of the 2023 Artificial Life Conference.

International Conference on Artificial Life (ALIFE), Sapporo, Japan, 24-28 July 2023.

Cambridge:

MIT Press.

S. 105.

Verfügbar unter: https://doi.org/10.1162/isal_a_00648
Schneider, Johannes Josef; Faggian, Alessia; Jamieson, William David; Weyland, Mathias Sebastian; Li, Jin; Castell, Oliver; Matuttis, Hans-Georg; Barrow, David Anthony; Patiño Diaz, Aitor; Sanahuja, Lorena Cebolla; Holler, Silvia; Casiraghi, Federica; Hanczyc, Martin Michael; Flumini, Dandolo; Eggenberger Hotz, Peter; Füchslin, Rudolf Marcel,

2023.

Artificial chemistry performed in an agglomeration of droplets with restricted molecule transfer [Paper].

In:

De Stefano, Claudio; Fontanella, Francesco; Vanneschi, Leonardo, Hrsg.,

Artificial Life and Evolutionary Computation.

XVI Italian Workshop on Artificial Life and Evolutionary Computation (WIVACE), Gaeta, Italy, 14-16 September 2022.

Cham:

Springer.

S. 107-118.

Communications in Computer and Information Science ; 1780.

Verfügbar unter: https://doi.org/10.1007/978-3-031-31183-3_9
Matuttis, Hans-Georg; Schneider, Johannes Josef; Li, Jin; Barrow, David Anthony; Faggian, Alessia; Patiño Diaz, Aitor; Holler, Silvia; Casiraghi, Federica; Sanahuja, Lorena Cebolla; Hanczyc, Martin Michael; Weyland, Mathias Sebastian; Flumini, Dandolo; Eggenberger Hotz, Peter; Dimitriou, Pantelitsa; Jamieson, William David; Castell, Oliver; Füchslin, Rudolf Marcel,

2023.

Computational investigation of the clustering of droplets in widening pipe geometries [Paper].

In:

De Stefano, Claudio; Fontanella, Francesco; Vanneschi, Leonardo, Hrsg.,

Artificial Life and Evolutionary Computation.

XVI Italian Workshop on Artificial Life and Evolutionary Computation (WIVACE), Gaeta, Italy, 14-16 September 2022.

Cham:

Springer.

S. 82-93.

Communications in Computer and Information Science ; 1780.

Verfügbar unter: https://doi.org/10.1007/978-3-031-31183-3_7
Schneider, Johannes Josef; Faggian, Alessia; Patiño Diaz, Aitor; Li, Jin; Holler, Silvia; Casiraghi, Federica; Sanahuja, Lorena Cebolla; Matuttis, Hans-Georg; Hanczyc, Martin Michael; Barrow, David Anthony; Weyland, Mathias Sebastian; Flumini, Dandolo; Eggenberger Hotz, Peter; Dimitriou, Pantelitsa; Jamieson, William David; Castell, Oliver; Eschle, Patrik; Füchslin, Rudolf Marcel,

2023.

Network creation during agglomeration processes of polydisperse and monodisperse systems of droplets [Paper].

In:

De Stefano, Claudio; Fontanella, Francesco; Vanneschi, Leonardo, Hrsg.,

Artificial Life and Evolutionary Computation.

XVI Italian Workshop on Artificial Life and Evolutionary Computation (WIVACE), Gaeta, Italy, 14-16 September 2022.

Cham:

Springer.

S. 94-106.

Communications in Computer and Information Science ; 1780.

Verfügbar unter: https://doi.org/10.1007/978-3-031-31183-3_8
Füchslin, Rudolf Marcel; Ambühl, Jacques; Faggian, Alessia; Fellermann, Harold M.; Flumini, Dandolo; Geller, Armando; Hanczyc, Martin M.; Klinkert, Andreas; Krütli, Pius; Matuttis, Hans-Georg; Ott, Thomas; Scheidegger, Stephan; Schmid, Gary Bruno; Smieszek, Timo; Schneider, Johannes J.; Steiner, Albert; Weyland, Mathias S.,

2023.

Ethical aspects of computational modelling in science, decision support and communication [Paper].

In:

Artificial Life and Evolutionary Computation.

XV Italian Workshop on Artificial Life and Evolutionary Computation (WIVACE), Winterthur, Switzerland, 15-17 September 2021.

Cham:

Springer.

Communications in Computer and Information Science ; 1722.

Verfügbar unter: https://doi.org/10.1007/978-3-031-23929-8_24
Schneider, Johannes Josef; Weyland, Mathias Sebastian; Flumini, Dandolo; Füchslin, Rudolf Marcel,

2023.

Exploring the three-dimensional arrangement of droplets [Paper].

In:

Artificial Life and Evolutionary Computation.

XV Italian Workshop on Artificial Life and Evolutionary Computation (WIVACE), Winterthur, Switzerland, 15-17 September 2021.

Cham:

Springer.

Communications in Computer and Information Science ; 1722.

Verfügbar unter: https://doi.org/10.1007/978-3-031-23929-8_6
Schneider, Johannes Josef; Barrow, David Anthony; Li, Jin; Weyland, Mathias Sebastian; Flumini, Dandolo; Eggenberger Hotz, Peter; Füchslin, Rudolf Marcel,

2023.

Geometric restrictions to the agglomeration of spherical particles [Paper].

In:

Artificial Life and Evolutionary Computation.

XV Italian Workshop on Artificial Life and Evolutionary Computation (WIVACE), Winterthur, Switzerland, 15-17 September 2021.

Cham:

Springer.

Communications in Computer and Information Science ; 1722.

Verfügbar unter: https://doi.org/10.1007/978-3-031-23929-8_7
Schneider, Johannes Josef; Faggian, Alessia; Matuttis, Hans-Georg; Barrow, David Anthony; Li, Jin; Holler, Silvia; Casiraghi, Federica; Cebolla Sanahuja, Lorena; Hanczyc, Martin Michael; Eschle, Patrik; Weyland, Mathias Sebastian; Flumini, Dandolo; Eggenberger Hotz, Peter; Füchslin, Rudolf Marcel,

2023.

Obstacles on the pathway towards chemical programmability using agglomerations of droplets [Paper].

In:

Artificial Life and Evolutionary Computation.

XV Italian Workshop on Artificial Life and Evolutionary Computation (WIVACE), Winterthur, Switzerland, 15-17 September 2021.

Cham:

Springer.

Communications in Computer and Information Science ; 1722.

Verfügbar unter: https://doi.org/10.1007/978-3-031-23929-8_4
Matuttis, Hans-Georg; Holler, Silvia; Casiraghi, Federica; Schneider, Johannes Josef; Faggian, Alessia; Füchslin, Rudolf Marcel; Hanczyc, Martin Michael,

2023.

The good, the bad and the ugly : droplet recognition by a “shootout”-heuristics [Paper].

In:

Artificial Life and Evolutionary Computation.

XV Italian Workshop on Artificial Life and Evolutionary Computation (WIVACE), Winterthur, Switzerland, 15-17 September 2021.

Cham:

Springer.

S. 51-62.

Communications in Computer and Information Science ; 1722.

Verfügbar unter: https://doi.org/10.1007/978-3-031-23929-8_5
Füchslin, Rudolf M.,

2022.

Applied science : the curse and blessing of applying science.

In:

Talk at Newcastle University, Newcastle, United Kingdom, 15 March 2022.
Füchslin, Rudolf M.,

2021.

Modeling social systems at ZHAW.

In:

XV International Workshop on Artificial Life and Evolutionary Computation (WIVACE), Winterthur, Switzerland, 15-17 September 2021.
Faggian, Alessia; Schneider, Johannes Josef,

2021.

Introduction to the generation and analysis of networks of droplets : lecture at the ACDC Summer School, online, 27 August 2021.

Verfügbar unter: https://acdch2020.eu/summer-school
Füchslin, Rudolf M.,

2021.

Computational approaches in biology.

In:

ACDC Summer School, online, 26-27 August 2021.
Schneider, Johannes Josef; Faggian, Alessia; Holler, Silvia; Casiraghi, Federica; Li, Jin; Cebolla Sanahuja, Lorena; Matuttis, Hans-Georg; Hanczyc, Martin Michael; Barrow, David Anthony; Weyland, Mathias Sebastian; Flumini, Dandolo; Eggenberger Hotz, Peter; Füchslin, Rudolf Marcel,

2021.

Influence of the geometry on the agglomeration of a polydisperse binary system of spherical particles [Paper].

In:

ALIFE 2021: The 2021 Conference on Artificial Life.

International Conference on Artificial Life (ALIFE), online, 19-23 July 2021.

Cambridge:

MIT Press.

S. 71.

Verfügbar unter: https://doi.org/10.1162/isal_a_00392
Schneider, Johannes Josef; Faggian, Alessia; Holler, Silvia; Casiraghi, Federica; Li, Jin; Cebolla Sanahuja, Lorena; Matuttis, Hans-Georg; Hanczyc, Martin Michael; Barrow, David Anthony; Weyland, Mathias Sebastian; Flumini, Dandolo; Eggenberger Hotz, Peter; Füchslin, Rudolf Marcel,

2021.

Influence of the geometry on the agglomeration of a polydisperse binary system of spherical particles.

In:

International Conference on Artificial Life (ALIFE), online, 19-23 July 2021.

Verfügbar unter: https://www.youtube.com/watch?v=2uSgimAHU4I
Schneider, Johannes Josef; Weyland, Mathias Sebastian; Flumini, Dandolo; Füchslin, Rudolf Marcel,

2020.

Investigating three-dimensional arrangements of droplets [Paper].

In:

Cicirelli, Franco; Guerrieri, Antonio; Pizzuti, Clara; Socievole, Annalisa; Spezzano, Giandomenico; Vinci, Andrea, Hrsg.,

Artificial Life and Evolutionary Computation.

XIV Italian Workshop on Artificial Life and Evolutionary Computation (WIVACE), Rende, Italy, 18-20 September 2019.

Cham:

Springer.

S. 171-184.

Communications in Computer and Information Science ; 1200.

Verfügbar unter: https://doi.org/10.1007/978-3-030-45016-8_17
Schneider, Johannes Josef; Weyland, Mathias Sebastian; Flumini, Dandolo; Matuttis, Hans-Georg; Morgenstern, Ingo; Füchslin, Rudolf Marcel,

2020.

Studying and simulating the three-dimensional arrangement of droplets [Paper].

In:

Cicirelli, Franco; Guerrieri, Antonio; Pizzuti, Clara; Socievole, Annalisa; Spezzano, Giandomenico; Vinci, Andrea, Hrsg.,

Artificial Life and Evolutionary Computation.

XIV Italian Workshop on Artificial Life and Evolutionary Computation (WIVACE), Rende, Italy, 18-20 September 2019.

Cham:

Springer.

Communications in Computer and Information Science ; 1200.

Verfügbar unter: https://doi.org/10.1007/978-3-030-45016-8_16
Flumini, Dandolo; Weyland, Mathias S.; Schneider, Johannes J.; Fellermann, Harold; Füchslin, Rudolf M.,

2020.

Towards programmable chemistries [Paper].

In:

Cicirelli, Franco; Guerrieri, Antonio; Pizzuti, Clara; Socievole, Annalisa; Spezzano, Giandomenico; Vinci, Andrea, Hrsg.,

Artificial Life and Evolutionary Computation.

XIV Italian Workshop on Artificial Life and Evolutionary Computation (WIVACE), Rende, Italy, 18-20 September 2019.

Springer.

Communications in Computer and Information Science ; 1200.

Verfügbar unter: https://doi.org/10.1007/978-3-030-45016-8_15

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