Dr. Johannes Josef Schneider

ZHAW School of Engineering
Forschungsschwerpunkt Applied Complex Systems Science
Technikumstrasse 71
8400 Winterthur

+41 (0) 58 934 74 58
johannesjosef.schneider@zhaw.ch

Projects

Next Generation 3D Tissue Models: Bio-Hybrid Hierarchical Organoid-Synthetic Tissues (Bio-HhOST) Comprised of Live and Artificial Cells. / Deputy project leader / Project ongoing
Extension SARS-CoV-2 Intervention modelling / Team member / Project completed
Decision support for pandemics / Team member / Project completed
SARS-CoV2 Modeling of Interventions on the Dynamics of the Pandemics / Deputy project leader / Project completed
Epidemiologische Multiskalensimulation zur Analyse der Übertragungsmechanismen in der COVID-19 Pandemie / Team member / Project completed
ACDC – Artificial Cells with Distributed Cores to Decipher Protein Function / Team member / Project completed

Publications

Conference contributions, peer-reviewed

Weyland, Mathias S.; Flumini, Dandolo; Schneider, Johannes J.; Faggian, Alessia; Patiño Diaz, Aitor; Füchslin, Rudolf Marcel,

2023.

A chemical compiler for the synthesis of branched oligomers on standardized chemical reaction structures [paper].

In:

ALIFE 2023: Ghost in the Machine : Proceedings of the 2023 Artificial Life Conference.

International Conference on Artificial Life (ALIFE), Sapporo, Japan, 24-28 July 2023.

Cambridge:

MIT Press.

pp. 105.

Available from: https://doi.org/10.1162/isal_a_00648
Schneider, Johannes Josef; Faggian, Alessia; Jamieson, William David; Weyland, Mathias Sebastian; Li, Jin; Castell, Oliver; Matuttis, Hans-Georg; Barrow, David Anthony; Patiño Diaz, Aitor; Sanahuja, Lorena Cebolla; Holler, Silvia; Casiraghi, Federica; Hanczyc, Martin Michael; Flumini, Dandolo; Eggenberger Hotz, Peter; Füchslin, Rudolf Marcel,

2023.

Artificial chemistry performed in an agglomeration of droplets with restricted molecule transfer [paper].

In:

De Stefano, Claudio; Fontanella, Francesco; Vanneschi, Leonardo, eds.,

Artificial Life and Evolutionary Computation.

XVI Italian Workshop on Artificial Life and Evolutionary Computation (WIVACE), Gaeta, Italy, 14-16 September 2022.

Cham:

Springer.

pp. 107-118.

Communications in Computer and Information Science ; 1780.

Available from: https://doi.org/10.1007/978-3-031-31183-3_9
Matuttis, Hans-Georg; Schneider, Johannes Josef; Li, Jin; Barrow, David Anthony; Faggian, Alessia; Patiño Diaz, Aitor; Holler, Silvia; Casiraghi, Federica; Sanahuja, Lorena Cebolla; Hanczyc, Martin Michael; Weyland, Mathias Sebastian; Flumini, Dandolo; Eggenberger Hotz, Peter; Dimitriou, Pantelitsa; Jamieson, William David; Castell, Oliver; Füchslin, Rudolf Marcel,

2023.

Computational investigation of the clustering of droplets in widening pipe geometries [paper].

In:

De Stefano, Claudio; Fontanella, Francesco; Vanneschi, Leonardo, eds.,

Artificial Life and Evolutionary Computation.

XVI Italian Workshop on Artificial Life and Evolutionary Computation (WIVACE), Gaeta, Italy, 14-16 September 2022.

Cham:

Springer.

pp. 82-93.

Communications in Computer and Information Science ; 1780.

Available from: https://doi.org/10.1007/978-3-031-31183-3_7
Schneider, Johannes Josef; Faggian, Alessia; Patiño Diaz, Aitor; Li, Jin; Holler, Silvia; Casiraghi, Federica; Sanahuja, Lorena Cebolla; Matuttis, Hans-Georg; Hanczyc, Martin Michael; Barrow, David Anthony; Weyland, Mathias Sebastian; Flumini, Dandolo; Eggenberger Hotz, Peter; Dimitriou, Pantelitsa; Jamieson, William David; Castell, Oliver; Eschle, Patrik; Füchslin, Rudolf Marcel,

2023.

Network creation during agglomeration processes of polydisperse and monodisperse systems of droplets [paper].

In:

De Stefano, Claudio; Fontanella, Francesco; Vanneschi, Leonardo, eds.,

Artificial Life and Evolutionary Computation.

XVI Italian Workshop on Artificial Life and Evolutionary Computation (WIVACE), Gaeta, Italy, 14-16 September 2022.

Cham:

Springer.

pp. 94-106.

Communications in Computer and Information Science ; 1780.

Available from: https://doi.org/10.1007/978-3-031-31183-3_8
Füchslin, Rudolf Marcel; Ambühl, Jacques; Faggian, Alessia; Fellermann, Harold M.; Flumini, Dandolo; Geller, Armando; Hanczyc, Martin M.; Klinkert, Andreas; Krütli, Pius; Matuttis, Hans-Georg; Ott, Thomas; Scheidegger, Stephan; Schmid, Gary Bruno; Smieszek, Timo; Schneider, Johannes J.; Steiner, Albert; Weyland, Mathias S.,

2023.

Ethical aspects of computational modelling in science, decision support and communication [paper].

In:

Artificial Life and Evolutionary Computation.

XV Italian Workshop on Artificial Life and Evolutionary Computation (WIVACE), Winterthur, Switzerland, 15-17 September 2021.

Cham:

Springer.

Communications in Computer and Information Science ; 1722.

Available from: https://doi.org/10.1007/978-3-031-23929-8_24
Schneider, Johannes Josef; Weyland, Mathias Sebastian; Flumini, Dandolo; Füchslin, Rudolf Marcel,

2023.

Exploring the three-dimensional arrangement of droplets [paper].

In:

Artificial Life and Evolutionary Computation.

XV Italian Workshop on Artificial Life and Evolutionary Computation (WIVACE), Winterthur, Switzerland, 15-17 September 2021.

Cham:

Springer.

Communications in Computer and Information Science ; 1722.

Available from: https://doi.org/10.1007/978-3-031-23929-8_6
Schneider, Johannes Josef; Barrow, David Anthony; Li, Jin; Weyland, Mathias Sebastian; Flumini, Dandolo; Eggenberger Hotz, Peter; Füchslin, Rudolf Marcel,

2023.

Geometric restrictions to the agglomeration of spherical particles [paper].

In:

Artificial Life and Evolutionary Computation.

XV Italian Workshop on Artificial Life and Evolutionary Computation (WIVACE), Winterthur, Switzerland, 15-17 September 2021.

Cham:

Springer.

Communications in Computer and Information Science ; 1722.

Available from: https://doi.org/10.1007/978-3-031-23929-8_7
Schneider, Johannes Josef; Lang, Andreas; Hirtreiter, Christian; Morgenstern, Ingo; Füchslin, Rudolf Marcel,

2023.

Investigation of the Ramsey-Pierce-Bowman model [paper].

In:

Artificial Life and Evolutionary Computation.

XV Italian Workshop on Artificial Life and Evolutionary Computation (WIVACE), Winterthur, Switzerland, 15-17 September 2021.

Cham:

Springer.

Communications in Computer and Information Science ; 1722.

Available from: https://doi.org/10.1007/978-3-031-23929-8_23
Schneider, Johannes Josef; Faggian, Alessia; Matuttis, Hans-Georg; Barrow, David Anthony; Li, Jin; Holler, Silvia; Casiraghi, Federica; Cebolla Sanahuja, Lorena; Hanczyc, Martin Michael; Eschle, Patrik; Weyland, Mathias Sebastian; Flumini, Dandolo; Eggenberger Hotz, Peter; Füchslin, Rudolf Marcel,

2023.

Obstacles on the pathway towards chemical programmability using agglomerations of droplets [paper].

In:

Artificial Life and Evolutionary Computation.

XV Italian Workshop on Artificial Life and Evolutionary Computation (WIVACE), Winterthur, Switzerland, 15-17 September 2021.

Cham:

Springer.

Communications in Computer and Information Science ; 1722.

Available from: https://doi.org/10.1007/978-3-031-23929-8_4
Matuttis, Hans-Georg; Holler, Silvia; Casiraghi, Federica; Schneider, Johannes Josef; Faggian, Alessia; Füchslin, Rudolf Marcel; Hanczyc, Martin Michael,

2023.

The good, the bad and the ugly : droplet recognition by a “shootout”-heuristics [paper].

In:

Artificial Life and Evolutionary Computation.

XV Italian Workshop on Artificial Life and Evolutionary Computation (WIVACE), Winterthur, Switzerland, 15-17 September 2021.

Cham:

Springer.

pp. 51-62.

Communications in Computer and Information Science ; 1722.

Available from: https://doi.org/10.1007/978-3-031-23929-8_5
Schneider, Johannes Josef; Weyland, Mathias Sebastian; Flumini, Dandolo; Füchslin, Rudolf Marcel, eds.,

2023.

Artificial Life and Evolutionary Computation : 15th Italian Workshop, WIVACE 2021, Winterthur, Switzerland, September 15–17, 2021.

XV International Workshop on Artificial Life and Evolutionary Computation (WIVACE), Winterthur, Switzerland, 15-17 September 2021.

Cham:

Springer.

Communications in Computer and Information Science ; 1722.

ISBN 978-3-031-23928-1.

Available from: https://doi.org/10.1007/978-3-031-23929-8
Hotz, Peter E.; Schneider, Johannes J.; Casiraghi, Federica; Holler, Silvia; Hanczyc, Martin M.; Füchslin, Rudolf M.,

2022.

Simulations of vesicular disentanglement [paper].

In:

Holler, Silvia; Löffler, Richard; Bartlett, Stuart, eds.,

ALIFE 2022: The 2022 Conference on Artificial Life.

International Conference on Artificial Life (ALIFE), online, 18-22 July 2022.

Cambridge:

MIT Press.

pp. 25.

Available from: https://doi.org/10.1162/isal_a_00505
Chehda Moreno, Nora; Weyland, Mathias; Smieszek, Timo; Füchslin, Rudolf Marcel; Krütli, Pius; Schneider, Johannes Josef; Scheidegger, Stephan,

2021.

Interpreting difference measures for social contact matrices : impact on the pandemic dynamics [poster].

In:

8th International Conference on Infectious Disease Dynamics (Epidemics8), online, 30 November - 3 December 2021.
Schneider, Johannes Josef; Faggian, Alessia; Holler, Silvia; Casiraghi, Federica; Li, Jin; Cebolla Sanahuja, Lorena; Matuttis, Hans-Georg; Hanczyc, Martin Michael; Barrow, David Anthony; Weyland, Mathias Sebastian; Flumini, Dandolo; Eggenberger Hotz, Peter; Füchslin, Rudolf Marcel,

2021.

Influence of the geometry on the agglomeration of a polydisperse binary system of spherical particles [paper].

In:

ALIFE 2021: The 2021 Conference on Artificial Life.

International Conference on Artificial Life (ALIFE), online, 19-23 July 2021.

Cambridge:

MIT Press.

pp. 71.

Available from: https://doi.org/10.1162/isal_a_00392
Schneider, Johannes Josef; Weyland, Mathias Sebastian; Flumini, Dandolo; Füchslin, Rudolf Marcel,

2020.

Investigating three-dimensional arrangements of droplets [paper].

In:

Cicirelli, Franco; Guerrieri, Antonio; Pizzuti, Clara; Socievole, Annalisa; Spezzano, Giandomenico; Vinci, Andrea, eds.,

Artificial Life and Evolutionary Computation.

XIV Italian Workshop on Artificial Life and Evolutionary Computation (WIVACE), Rende, Italy, 18-20 September 2019.

Cham:

Springer.

pp. 171-184.

Communications in Computer and Information Science ; 1200.

Available from: https://doi.org/10.1007/978-3-030-45016-8_17
Schneider, Johannes Josef; Weyland, Mathias Sebastian; Flumini, Dandolo; Matuttis, Hans-Georg; Morgenstern, Ingo; Füchslin, Rudolf Marcel,

2020.

Studying and simulating the three-dimensional arrangement of droplets [paper].

In:

Cicirelli, Franco; Guerrieri, Antonio; Pizzuti, Clara; Socievole, Annalisa; Spezzano, Giandomenico; Vinci, Andrea, eds.,

Artificial Life and Evolutionary Computation.

XIV Italian Workshop on Artificial Life and Evolutionary Computation (WIVACE), Rende, Italy, 18-20 September 2019.

Cham:

Springer.

Communications in Computer and Information Science ; 1200.

Available from: https://doi.org/10.1007/978-3-030-45016-8_16
Flumini, Dandolo; Weyland, Mathias S.; Schneider, Johannes J.; Fellermann, Harold; Füchslin, Rudolf M.,

2020.

Towards programmable chemistries [paper].

In:

Cicirelli, Franco; Guerrieri, Antonio; Pizzuti, Clara; Socievole, Annalisa; Spezzano, Giandomenico; Vinci, Andrea, eds.,

Artificial Life and Evolutionary Computation.

XIV Italian Workshop on Artificial Life and Evolutionary Computation (WIVACE), Rende, Italy, 18-20 September 2019.

Springer.

Communications in Computer and Information Science ; 1200.

Available from: https://doi.org/10.1007/978-3-030-45016-8_15
Schneider, Johannes Josef; Weyland, Mathias; Flumini, Dandolo; Füchslin, Rudolf Marcel,

2019.

Simulation of a microfluidic system of droplets [poster].

In:

Joint Annual Meeting of the Swiss Physical Society and the Austrian Physical Society, Zurich, 26-30 August 2019.
Füchslin, Rudolf Marcel; Schneider, Johannes Josef; Ott, Thomas; Walker, Richard,

2019.

Simplified modeling of the evolution of skills in a spatially resolved environment [paper].

In:

Fellermann, Harold; Bacardit, Jaume; Goñi-Moreno, Angel; Füchslin, Rudolf Marcel, eds.,

Proceedings of the Artificial Life Conference 2019.

International Conference on Artificial Life (ALIFE), Newcastle, United Kingdom, 29 July - 2 August 2019.

Massachusetts Institute of Technology.

pp. 324-330.

Available from: https://doi.org/10.1162/isal_a_00182

Other publications

Füchslin, Rudolf Marcel; Krütli, Pius; Ott, Thomas; Scheidegger, Stephan; Schneider, Johannes Josef; Seric, Marko; Smieszek, Timo; Weyland, Mathias S.,

2022.

Minimal models for spatially resolved population dynamics : applications to coexistence in multi – trait models [paper].

In:

ALIFE 2022: The 2022 Conference on Artificial Life.

International Conference on Artificial Life (ALIFE), online, 18-22 July 2022.

Cambridge:

MIT Press.

pp. 75.

Available from: https://doi.org/10.1162/isal_a_00504
Schneider, Johannes Josef; Faggian, Alessia; Holler, Silvia; Casiraghi, Federica; Li, Jin; Sanahuja, Lorena Cebolla; Matuttis, Hans-Georg; Hanczyc, Martin Michael; Barrow, David Anthony; Weyland, Mathias Sebastian; Flumini, Dandolo; Eggenberger Hotz, Peter; Eschle, Patrik; Patiño Diaz, Aitor; Füchslin, Rudolf Marcel,

2022.

Paths in a network of polydisperse spherical droplets [paper].

In:

ALIFE 2022: The 2022 Conference on Artificial Life.

International Conference on Artificial Life (ALIFE), online, 18-22 July 2022.

Cambridge:

MIT Press.

pp. 23.

Available from: https://doi.org/10.1162/isal_a_00502
Faggian, Alessia; Schneider, Johannes Josef,

2021.

Introduction to the generation and analysis of networks of droplets : lecture at the ACDC Summer School, online, 27 August 2021.

Available from: https://acdch2020.eu/summer-school
Weyland, Mathias S.; Flumini, Dandolo; Schneider, Johannes J.; Füchslin, Rudolf M.,

2020.

A compiler framework to derive microfluidic platforms for manufacturing hierarchical, compartmentalized structures that maximize yield of chemical reactions [paper].

In:

ALIFE 2020: The 2020 Conference on Artificial Life.

International Conference on Artificial Life (ALIFE), online, 13-18 July 2020.

Cambridge:

MIT Press.

pp. 602-604.

Available from: https://doi.org/10.1162/isal_a_00303

Oral conference contributions and abstracts

Schneider, Johannes Josef; Barrow, David Anthony; Li, Jin; Weyland, Mathias; Flumini, Dandolo; Eggenberger Hotz, Peter; Füchslin, Rudolf Marcel,

2023.

Bidisperse extension of the kissing number problem.

In:

28th International Conference on Statistical Physics (Statphys28), Tokyo, Japan, 7-11 August 2023.
Schneider, Johannes Josef; Faggian, Alessia; Holler, Silvia; Casiraghi, Federica; Li, Jin; Cebolla Sanahuja, Lorena; Matuttis, Hans-Georg; Hanczyc, Martin Michael; Barrow, David Anthony; Weyland, Mathias Sebastian; Flumini, Dandolo; Eggenberger Hotz, Peter; Füchslin, Rudolf Marcel,

2021.

Influence of the geometry on the agglomeration of a polydisperse binary system of spherical particles.

In:

International Conference on Artificial Life (ALIFE), online, 19-23 July 2021.

Available from: https://www.youtube.com/watch?v=2uSgimAHU4I
Füchslin, Rudolf Marcel; Scheidegger, Stephan; Flumini, Dandolo; Schneider, Johannes Josef; Weyland, Mathias,

2019.

Morphological computation and control in medicine and related sciences.

In:

BioDynaMo, Zurich, 2-3 December 2019.
Schneider, Johannes Josef; Weyland, Mathias; Flumini, Dandolo; Füchslin, Rudolf Marcel,

2019.

Exploring the three-dimensional arrangement of droplets.

In:

XIV International Workshop on Artificial Life and Evolutionary Computation (WIVACE), Rende, Italy, 18-20 September 2019.
Schneider, Johannes Josef; Füchslin, Rudolf Marcel,

2019.

Simulations of artificial populations with competing skills.

In:

Joint Annual Meeting of the Swiss Physical Society and of the Austrian Physical Society, Zurich, 26-30 August 2019.
Füchslin, Rudolf Marcel; Schneider, Johannes Josef; Walker, Richard,

2019.

Simplified modeling of the evolution of skills in a spatially resolved environment.

In:

The 2019 Conference on Artificial Life, Newcastle, United Kingdom, 29 July - 2 August 2019.

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