Publications according to DDC572: Biochemistry

• Zeugolis, D. I.; Li, B.; Lareu, R.R.; Chan, C.K.; Raghunath, M.,

  2008.

  Collagen solubility testing, a quality assurance step for reproducible electro-spun nano-fibre fabrication : a technical note.

  Journal of Biomaterials Science, Polymer Edition.

  19(10), pp. 1307-1317.

  Available from: https://doi.org/10.1163/156856208786052344

• Runne, Heike; Régulier, Etienne; Kuhn, Alexandre; Zala, Diana; Gokce, Ozgun; Perrin, Valérie; Sick, Beate; Aebischer, Patrick; Déglon, Nicole; Luthi-Carter, Ruth,

  2008.

  Dysregulation of gene expression in primary neuron models of Huntington's disease shows that polyglutamine-related effects on the striatal transcriptome may not be dependent on brain circuitry.

  Journal of Neuroscience.

  28(39), pp. 9723-9731.

  Available from: https://doi.org/10.1523/JNEUROSCI.3044-08.2008

• Zeugolis, Dimitrios I.; Khew, Shih T.; Yew, Elijah S.Y.; Ekaputra, Andrew K.; Tong, Yen W.; Yung, Lin-Yue L.; Hutmacher, Dietmar W.; Sheppard, Colin; Raghunath, Michael,

  2008.

  Electro-spinning of pure collagen fibres : just an expensive way to make gelatin?.

  Biomaterials.

  29(15), pp. 2293-2305.

  Available from: https://doi.org/10.1016/j.biomaterials.2008.02.009

• Marti, Roger; Höck, Stefan,

  2007.

  Microreactor systems in peptide synthesis [poster].

  In:

  Workshop on Microstructured Devices in PRD for Fine Chemicals, 2007.

• Cuperus, S.; Eibl-Schindler, Regine; Hühn, Tilo; Amado, R.,

  2007.

  Plant cell culture based platform investigating biochemical processes in wine production.

  BioForum Europe.

  6, pp. 2-4.

• Dürr, Oliver; Duval, François; Nichols, Anthony; Lang, Paul; Brodte, Annette; Heyse, Stephan; Besson, Dominique,

  2007.

  Robust hit identification by quality assurance and multivariate data analysis of a high-content, cell-based assay.

  Journal of Biomolecular Screening.

  12(8), pp. 1042-1049.

  Available from: https://doi.org/10.1177/1087057107309036

• Ho, Yen-Yi; Cope, Leslie; Dettling, Marcel; Parmigiani, Giovanni,

  2007.

  Statistical methods for identifying differentially expressed gene combinations

  .

  In:

  Methods in molecular biology.

  New York:

  Humana Press.

  pp. 171-191.

  Methods in Molecular Biology ; 408.

  Available from: https://doi.org/10.1007/978-1-59745-547-3_10

• Dürr, Oliver,

  2006.

  Multivariate analysis of siRNA / high content screening data.

  In:

  Right Symposium on RNAi & High-Content Screening, Dresden, Germany, 12 September 2006.

• Yildirim, Selçuk; Ruinatscha, Reto; Gross, Rainer; Wohlgemuth, Roland; Kohler, Hans-Peter E.; Witholt, Bernard; Schmid, Andreas,

  2006.

  Selective hydrolysis of the nitrile group of cis-dihydrodiols from aromatic nitriles.

  Journal of Molecular Catalysis B: Enzymatic.

  38(2), pp. 76-83.

  Available from: https://doi.org/10.1016/j.molcatb.2005.11.006

• Höck, Stefan; Borschberg, Hans-Jürg,

  2006.

  Enantioselective Synthesis of (−)-(19R)-Ibogamin-19-ol.

  Helvetica Chimica Acta.

  89(3), pp. 542-557.

  Available from: https://doi.org/10.1002/hlca.200690058

• Nair, Prashant; Schaub, Beat E.; Huang, Kai; Chen, Xiang; Murphy, Robert F.; Griffith, Janice M.; Geuze, Hans J.; Rohrer, Jack,

  2005.

  Characterization of the TGN exit signal of the human mannose 6-phosphate uncovering enzyme.

  Journal of Cell Science.

  118(13), pp. 2949-2956.

  Available from: https://doi.org/10.1242/jcs.02434

• Dettling, Marcel,

  2005.

  Classification with gene expression data

  .

  In:

  Bioinformatics and computational biology solutions using R and bioconductor.

  New York:

  Springer.

  pp. 421-430.

  Statistics for Biology and Health.

  Available from: https://doi.org/10.1007/0-387-29362-0_24

• Pulipparacharuvil, Suprabha; Akbar, Mohammed; Ray, Sanchali; Sevrioukov, Evgueny A.; Haberman, Adam S.; Rohrer, Jack; Krämer, Helmut,

  2005.

  Drosophila Vps16A is required for trafficking to lysosomes and biogenesis of pigment granules.

  Journal of Cell Science.

  118(16), pp. 3663-3673.

  Available from: https://doi.org/10.1242/jcs.02502

• Hothorn, Torsten; Dettling, Marcel; Bühlmann, Peter,

  2005.

  Ensemble methods of computational inference

  .

  In:

  Bioinformatics and computational biology solutions using R and bioconductor.

  New York:

  Springer.

  pp. 293-311.

  Statistics for Biology and Health.

  Available from: https://doi.org/10.1007/0-387-29362-0_17

• Dettling, Marcel,

  2005.

  Finding predictive gene groups from microarray data and combining them with clinical predictor variables [paper].

  In:

  Proceedings of the 55th Session of the International Statistical Institute.

  55th Session of the International Statistical Institute (ISI), Sydney, Australia, 6-12 April 2005.

  Available from: http://isi.cbs.nl/iamamember/CD6-Sydney2005/ISI2005_Papers/234.pdf

• Heyse, Stephan; Brodte, Annette; Bruttger, Oliver; Dürr, Oliver; Freeman, Tobe; Jung, Tom; Lindemann, Michael; Ottl, Johannes; Rinn, Bernd,

  2005.

  Quantifying bioactivity on a large scale : quality assurance and analysis of multiparametric ultra-HTS data.

  SLAS Technology: Translating Life Sciences Innovation.

  10(4), pp. 207-212.

  Available from: https://doi.org/10.1016/j.jala.2005.05.003

• Yildirim, Selçuk; Franko, Telma T.; Wohlgemuth, Roland; Kohler, Hans-Peter E.; Witholt, Bernard; Schmid, Andreas,

  2005.

  Recombinant chlorobenzene dioxygenase from Pseudomonas sp. P51: a biocatalyst for regioselective oxidation of aromatic nitriles.

  Advanced Synthesis & Catalysis.

  347(7-8), pp. 1060-1072.

  Available from: https://doi.org/10.1002/adsc.200505075

• Dettling, Marcel; Gabrielson, Edward; Parmigiani, Giovanni,

  2005.

  Searching for differentially expressed gene combinations.

  Genome Biology.

  6(R88).

  Available from: https://doi.org/10.1186/gb-2005-6-10-r88

• Miao, Jun; Wu, Wei; Spielmann, Thomas; Belfort, Marlene; Derbyshire, Victoria; Belfort, Georges,

  2005.

  Single-step affinity purification of toxic and non-toxic proteins on a fluidics platform.

  Lab on a Chip.

  2005(3), pp. 248-253.

  Available from: https://doi.org/10.1039/b413292k

• Dettling, Marcel,

  2004.

  BagBoosting for tumor classification with gene expression data.

  Bioinformatics.

  20(18), pp. 3583-3593.

  Available from: https://doi.org/10.1093/bioinformatics/bth447

• Müntener, Kathrin; Zwicky, Roman; Csucs, Gabor; Rohrer, Jack; Baici, Antonio,

  2004.

  Exon skipping of cathepsin B : mitochondrial targeting of a lysosomal peptidase provokes cell death.

  Journal of Biological Chemistry.

  279(39), pp. 41012-41017.

  Available from: https://doi.org/10.1074/jbc.M405333200

• Stöckli, Jacqueline; Höning, Stefan; Rohrer, Jack,

  2004.

  The acidic cluster of the CK2 site of the cation-dependent mannose 6-phosphate receptor (CD-MPR) but not its phosphorylation is required for GGA1 and AP-1 binding.

  Journal of Biological Chemistry.

  279(22), pp. 23542-23549.

  Available from: https://doi.org/10.1074/jbc.M313525200

• Gentleman, Robert C.; Carey, Vincent J.; Bates, Douglas M.; Bolstad, Ben; Dettling, Marcel; Dudoit, Sandrine; Ellis, Byron; Gautier, Laurent; Ge, Yongchao; Gentry, Jeff; Hornik, Kurt; Hothorn, Torsten; Huber, Wolfgang; Iacus, Stefano; Irizarry, Rafael; Leisch, Friedrich; Li, Cheng; Maechler, Martin; Rossini, Anthony J.; Sawitzki, Gunther; Smith, Colin; Smyth, Gordon; Tierney, Luke; Yang, Jean YH.; Zhang, Jianhua,

  2004.

  Bioconductor : open software development for computational biology and bioinformatics.

  Genome Biology.

  5(R80).

  Available from: https://doi.org/10.1186/gb-2004-5-10-r80

• Höck, Stefan; Koch, Florian; Borschberg, Hans-Jürg,

  2004.

  Chirality transfer in an Ireland-Claisen rearrangement : a new approach toward the Iboga alkaloids.

  Tetrahedron: Asymmetry.

  15(11), pp. 1801-1808.

  Available from: https://doi.org/10.1016/j.tetasy.2004.04.028

• Dettling, Marcel; Bühlmann, Peter,

  2004.

  Finding predictive gene groups from microarray data.

  Journal of Multivariate Analysis.

  90(1), pp. 106-131.

  Available from: https://doi.org/10.1016/j.jmva.2004.02.012