Publications according to DDC572: Biochemistry

• Garcia, Victor; Anisimova, Maria,

  2018.

  Accounting for programmed ribosomal frameshifting in the computation of codon usage bias indices.

  bioRxiv.

  Available from: https://doi.org/10.1101/293340

• Garcia, Victor; Glassberg, Emily C.; Harpak, Arbel; Feldman, Marcus W.,

  2018.

  Clonal interference can cause wavelet-like oscillations of multilocus linkage disequilibrium.

  Journal of the Royal Society Interface.

  15(140).

  Available from: https://doi.org/10.1098/rsif.2017.0921

• Fahrentrapp, Johannes; Rezzonico, Fabio,

  2018.

  Disease-specific genes expressed in compatible plant-pathogen interactions : examples from tomato leaves.

  In:

  Plant and Animal Genomes Conference PAG XXVI, San Diego, USA, 12-17 January 2018.

• Garcia, Victor; Zoller, Stefan; Anisimova, Maria,

  2018.

  Accounting for programmed ribosomal frameshifting in the computation of codon usage bias indices [poster].

  In:

  Symposium on Quantitative Network Biology, Kandersteg, 19-20 November 2018.

• Luedin, Samuel M.; Pothier, Joël F.; Danza, Francesco; Storelli, Nicola; Frigaard, Niels-Ulrik; Wittwer, Matthias; Tonolla, Mauro,

  2018.

  Complete genome sequence of “Thiodictyon syntrophicum” sp. nov. strain Cad16T, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake Cadagno.

  Standards in Genomic Sciences.

  13(14).

  Available from: https://doi.org/10.1186/s40793-018-0317-z

• Knecht, Leandra E.; Born, Yannick; Pothier, Joël F.; Loessner, Martin J.; Fieseler, Lars,

  2018.

  Complete genome sequences of erwinia amylovora phages vB_EamP-S2 and vB_EamM-Bue1.

  Microbiology Resource Announcements.

  7(3).

  Available from: https://doi.org/10.1128/MRA.00891-18

• Wolfram, Evelyn; Trifan, Adriana,

  2018.

  Computational aids for assessing bioactivities

  .

  In:

  Sarker, Satyajit; Nahar, Lutfun, eds.,

  Computational phytochemistry.

  Amsterdam:

  Elsevier.

  pp. 277-300.

  Available from: https://doi.org/10.1016/B978-0-12-812364-5.00010-9

• Weyland, Mathias; Thumser-Henner, Pauline; Rohrer Bley, Carla; Ulzega, Simone; Petri-Fink, Alke; Lattuada, Marco; Scheidegger, Stephan; Füchslin, Rudolf Marcel,

  2018.

  Dynamic DNA damage and repair modeling : bridging the gap between experimental damage readout and model structure.

  In:

  XIII International Workshop on Artificial Life and Evolutionary Computation (WIVACE), Parma, Italy, 10-12 September 2018.

• Gétaz, Michael; Krijger, Marjon; Rezzonico, Fabio; Smits, Theo; van der Wolf, Jan M.; Pothier, Joël F.,

  2018.

  Genome-based population structure analysis of the strawberry plant pathogen Xanthomonas fragariae reveals two distinct groups that evolved independently before its species description.

  Microbial Genomics.

  2018(4).

  Available from: https://doi.org/10.1099/mgen.0.000189

• Mattle-Greminger, Maja P.; Bilgin Sonay, Tugce; Nater, Alexander; Pybus, Marc; Desai, Tariq; de Valles, Guillem; Casals, Ferran; Scally, Aylwyn; Bertranpetit, Jaume; Marques-Bonet, Tomas; van Schaik, Carel P.; Anisimova, Maria; Krützen, Michael,

  2018.

  Genomes reveal marked differences in the adaptive evolution between orangutan species.

  Genome Biology.

  19(193).

  Available from: https://doi.org/10.1186/s13059-018-1562-6

• Rabyk, Mariia; Yushchuk, Oleksandr; Rokytskyy, Ihor; Anisimova, Maria; Ostash, Bohdan,

  2018.

  Genomic insights into evolution of AdpA family master regulators of morphological differentiation and secondary metabolism in streptomyces.

  Journal of Molecular Evolution.

  86(3-4), pp. 204-215.

  Available from: https://doi.org/10.1007/s00239-018-9834-z

• Maiolo, Massimo; Zhang, Xiaolei; Gil, Manuel; Anisimova, Maria,

  2018.

  Progressive multiple sequence alignment with indel evolution.

  BMC Bioinformatics.

  19(331).

  Available from: https://doi.org/10.1186/s12859-018-2357-1

• Arai, Satoshi; Kriszt, Rókus; Harada, Kazuki; Looi, Liang‐Sheng; Matsuda, Shogo; Wongso, Devina; Suo, Satoshi; Ishiura, Shoichi; Tseng, Yu‐Hua; Raghunath, Michael; Ito, Toshiro; Tsuboi, Takashi; Kitaguchi, Tetsuya,

  2018.

  RGB‐Color intensiometric indicators to visualize spatiotemporal dynamics of ATP in single cells.

  Angewandte Chemie: International Edition.

  57(34), pp. 10873-10878.

  Available from: https://doi.org/10.1002/anie.201804304

• Schönborn, Andreas; Schmid, Pascal; Bräm, Sarah; Reifferscheid, Georg; Ohlig, Marina; Buchinger, Sebastian,

  2017.

  Unprecedented sensitivity of the planar yeast estrogen screen by using a spray-on technology.

  Journal of Chromatography A.

  1530, pp. 185-191.

  Available from: https://doi.org/10.1016/j.chroma.2017.11.009

• Trifan, Adriana; Opitz, Sebastian; Josuran, Roland; Grubelnik, Andreas; Esslinger, Nils; Peter, Samuel; Bräm, Sarah; Meier, Nadja; Wolfram, Evelyn,

  2017.

  Is comfrey root more than toxic pyrrolizidine alkaloids? Salvianolic acids among antioxidant polyphenols in comfrey (Symphytum officinale L.) roots.

  Food and Chemical Toxicology.

  112, pp. 178-187.

  Available from: https://doi.org/10.1016/j.fct.2017.12.051

• Schenk, A; Ziegler, LN; Meier, Nadja; Peter, Samuel; Wolfram, Evelyn,

  2017.

  Combined determination of sennosides, monomeric hydroxyanthacene glycosides and anthraquinone aglycones by UHPLC-DAD [poster].

  In:

  65th International Congress and Annual Meeting of the Society for Medicinal Plant and Natural Product Research (GA 2017), Basel, 3-6 September 2017.

  Thieme.

  Available from: https://doi.org/10.1055/s-0037-1608215

• Wolfram, Evelyn; Peter, Samuel; Todorova, M; Trendafilova, A; Motyka, V; Dobrev, P; Danova, Kalina,

  2017.

  Effect of growth regulators and photoperiod on endogenous phytohormonal levels and polyphenolic production in Artemisa alba cell aggregate cultures [poster].

  In:

  65th International Congress and Annual Meeting of the Society for Medicinal Plant and Natural Product Research (GA 2017), Basel, 3-6 September 2017.

  Thieme.

  Available from: https://doi.org/10.1055/s-0037-1608367

• Anisimova, Maria,

  2017.

  Detecting selection signature in genomics sequences.

  In:

  CBID Computational Biology for Infectious Diseases Summer School, Quy Nhon, Vietnam, 17-24 September 2017.

  ICISE.

• Bliven, Spencer; Anisimova, Maria,

  2017.

  Phylogenetics of tandem repeats with circular HMMs : a case study on Armadillo Repeat Proteins [poster].

  In:

  NGP-Net 2017, Symposium on Non-globular Proteins, Kosice, Slovakia, August 2017.

  ZHAW Zürcher Hochschule für Angewandte Wissenschaften.

  pp. 1.

  Available from: https://doi.org/10.21256/zhaw-4269

• 2017.

  Phylogenetic methods for detecting natural selection in genomic sequences.

  In:

  Scientific and Technological Developments of Research and Monitoring of Marine Biological Resources, Vladivostok, Russia, 22-24 May 2017.

• Wolfram, Evelyn; Bräm, Sarah,

  2017.

  Recent advances in effect-directed enzyme assays based on thin-layer chromatography.

  Phytochemical Analysis.

  28(2), pp. 74-86.

  Available from: https://doi.org/10.1002/pca.2669

• Bucar, Franz; Wolfram, Evelyn,

  2017.

  Bioassay-coupled chromatography : challenges and applications in natural product research.

  Phytochemical Analysis.

  28(2), pp. 73.

  Available from: https://doi.org/10.1002/pca.2675

• Danova, Kalina; Wolfram, Evelyn; Pedrussio, Simona; Koleva, Petya; Aneva, Ina; Evstatieva, Luba,

  2017.

  Biotechnological development and biological activity of Balkan endemic Sideritis scardica Griesb. [poster].

  In:

  65th International Congress and Annual Meeting of the Society for Medicinal Plant and Natural Product Research (GA 2017), Basel, 3-6 September 2017.

  Thieme.

  Available from: https://doi.org/10.1055/s-0037-1608366

• Hou, Yanyan; Kitaguchi, Tetsuya; Kriszt, Rókus; Tseng, Yu-Hua; Raghunath, Michael; Suzuki, Madoka,

  2017.

  Ca2+-associated triphasic pH changes in mitochondria during brown adipocyte activation.

  Molecular Metabolism.

  6(8), pp. 797-808.

  Available from: https://doi.org/10.1016/j.molmet.2017.05.013

• Coentro, João Quintas; Capella-Monsonís, Héctor; Graceffa, Valeria; Wu, Zhuning; Mullen, Anne Maria; Raghunath, Michael; Zeugolis, Dimitrios I.,

  2017.

  Collagen quantification in tissue specimens

  .

  In:

  Fibrosis.

  Springer.

  Methods in Molecular Biology ; 1627.

  Available from: https://doi.org/10.1007/978-1-4939-7113-8_22