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2020.

Complete or high-quality draft genome sequences of six Xanthomonas hortorum strains sequenced with short- and long-read technologies .

Microbiology Resource Announcements.

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pp. e00828-20.

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Martins, Leonor; Fernandes, Camila; Blom, Jochen; Dia, Nay C. ; Pothier, Joël F. ; Tavares, Fernando,

2020.

Xanthomonas euroxanthea sp. nov. : a new xanthomonad species including pathogenic and non-pathogenic strains of walnut .

International Journal of Systematic and Evolutionary Microbiology.

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Kaufmann, Moritz ; Schüle, Martin ; Smits, Theo ; Pothier, Joël ,

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Typing plasmids with distributed sequence representation [ paper ].

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Gétaz, Michael; Puławska, Joanna; Smits, Theo H.M. ; Pothier, Joël F. ,

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Host–pathogen interactions between Xanthomonas fragariae and its host Fragaria × ananassa investigated with a dual RNA-Seq analysis .

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Gétaz, Michael; Blom, Jochen; Smits, Theo H. M. ; Pothier, Joël F. ,

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Comparative genomics of Xanthomonas fragariae and Xanthomonas arboricola pv. fragariae reveals intra- and interspecies variations .

Phytopathology Research.

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Escursell, Mireia Marcé; Roschi, Alexia; Smits, Theo ; Rezzonico, Fabio ,

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Characterization and direct molecular discrimination of rpsL mutations leading to high streptomycin resistance in Erwinia amylovora .

Journal of Plant Pathology.

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Murray, Alison E.; Freudenstein, John; Gribaldo, Simonetta; Hatzenpichler, Roland; Hugenholtz, Philip; Kämpfer, Peter; Konstantinidis, Konstantinos T.; Lane, Christopher E.; Papke, R. Thane; Parks, Donovan H.; Rossello-Mora, Ramon; Stott, Matthew B.; Sutcliffe, Iain C.; Thrash, J. Cameron; Venter, Stephanus N.; Whitman, William B.; Acinas, Silvia G.; Amann, Rudolf I.; Anantharaman, Karthik; Armengaud, Jean; Baker, Brett J.; Barco, Roman A.; Bode, Helge B.; Boyd, Eric S.; Brady, Carrie L.; Carini, Paul; Chain, Patrick S. G.; Colman, Daniel R.; DeAngelis, Kristen M.; de los Rios, Maria Asuncion; Estrada-de los Santos, Paulina; Dunlap, Christopher A.; Eisen, Jonathan A.; Emerson, David; Ettema, Thijs J. G.; Eveillard, Damien; Girguis, Peter R.; Hentschel, Ute; Hollibaugh, James T.; Hug, Laura A.; Inskeep, William P.; Ivanova, Elena P.; Klenk, Hans-Peter; Li, Wen-Jun; Lloyd, Karen G.; Löffler, Frank E.; Makhalanyane, Thulani P.; Moser, Duane P.; Nunoura, Takuro; Palmer, Marike; Parro, Victor; Pedrós-Alió, Carlos; Probst, Alexander J.; Smits, Theo H.M. ; Steen, Andrew D.; Steenkamp, Emma T.; Spang, Anja; Stewart, Frank J.; Tiedje, James M.; Vandamme, Peter; Wagner, Michael; Wang, Feng-Ping; Hedlund, Brian P.; Reysenbach, Anna-Louise,

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Roadmap for naming uncultivated archaea and bacteria .

Nature Microbiology.

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Rothen, Julian; Sapugahawatte, Dulmini Nanayakkara; Li, Carmen; Lo, Norman; Vogel, Guido; Foucault, Frédéric; Pflüger, Valentin; Pothier, Joël ; Blom, Jochen; Daubenberger, Claudia; Ip, Margaret,

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A simple, rapid typing method for Streptococcus agalactiae based on ribosomal subunit proteins by MALDI-TOF MS .

Scientific Reports.

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Fossou, Romain K.; Pothier, Joël F. ; Zézé, Adolphe; Perret, Xavier,

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Bradyrhizobium ivorense sp. nov. as a potential local bioinoculant for Cajanus cajan cultures in Côte d’Ivoire .

International Journal of Systematic and Evolutionary Microbiology.

70(2),

pp. 1421-1430.

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Madhaiyan, Munusamy; Saravanan, Venkatakrishnan Sivaraj; Blom, Jochen; Smits, Theo ; Rezzonico, Fabio ; Kim, Soo-Jin; Weon, Hang-Yeon; Kwon, Soon-Wo; Whitman, William B.; Ji, Lianghui,

2019.

Phytobacter palmae sp. nov., a novel endophytic, N2 fixing, plant growth promoting Gammaproteobacterium isolated from oil palm (Elaeis guineensis Jacq.) .

International Journal of Systematic and Evolutionary Microbiology.

70,

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Oh, Woo Taek; Jun, Jin Woo; Giri, Sib Sankar; Yun, Saekil; Kim, Hyoun Joong; Kim, Sang Guen; Kim, Sang Wha; Kang, Jeong Woo; Han, Se Jin; Kwon, Jun; Kim, Ji Hyung; Smits, Theo H.M. ; Park, Se Chang,

2019.

Pseudomonas tructae sp. nov., novel species isolated from rainbow trout kidney .

International Journal of Systematic and Evolutionary Microbiology.

69(12),

pp. 3851-3856.

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Schneeberger, Pierre H. H.; Fuhrimann, Samuel; Becker, Sören L.; Pothier, Joël F. ; Duffy, Brion; Beuret, Christian; Frey, Jürg E.; Utzinger, Jürg,

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Qualitative microbiome profiling along a wastewater system in Kampala, Uganda .

Scientific Reports.

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Smits, Theo H.M. ,

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The importance of genome sequence quality to microbial comparative genomics .

BMC Genomics.

20(662).

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Smits, Theo H.M. ; Duffy, Brion; Blom, Jochen; Ishimaru, Carol A.; Stockwell, Virginia O.,

2019.

Pantocin A, a peptide-derived antibiotic involved in biological control by plant-associated Pantoea species .

Archives of Microbiology.

201(6),

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Luedin, Samuel M.; Storelli, Nicola; Danza, Francesco; Roman, Samuele; Wittwer, Matthias; Pothier, Joël F. ; Tonolla, Mauro,

2019.

Mixotrophic growth under micro-oxic conditions in the purple sulfur bacterium "Thiodictyon syntrophicum" .

Frontiers in Microbiology.

10(384).

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Eck, Mathilde; Sare, Abdoul; Massart, Sébastien; Schmautz, Zala ; Junge, Ranka ; Smits, Theo H. M. ; Jijakli, M.,

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Exploring bacterial communities in aquaponic systems .

Water.

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Palmisano, Marilena ; Kopp, Max; Vincent, Michel; Thoss, Hagen; Werdenberg, Carole; Wohler, Christian,

2019.

Botrytis-Resistenzen auf Erdbeeren .

Schweizer Obst.

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Rutz, Dominik; Frasson, David ; Sievers, Martin ; Blom, Jochen; Rezzonico, Fabio ; Pothier, Joël F. ; Smits, Theo H.M. ,

2019.

Comparative genomic analysis of the biotechnological potential of the novel species Pseudomonas wadenswilerensis CCOS 864T and Pseudomonas reidholzensis CCOS 865T .

Diversity.

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Ruinelli, Michela; Blom, Jochen; Smits, Theo ; Pothier, Joël ,

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Comparative genomics and pathogenicity potential of members of the Pseudomonas syringae species complex on Prunus spp .

BMC Genomics.

20(172).

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Luedin, Samuel; Liechti, Nicole; Cox, Raymond P.; Danza, Francesco; Frigaard, Niels-Ulrik; Posth, Nicole; Pothier, Joël F. ; Roman, Samuele; Storelli, Nicola; Wittwer, Matthias; Tonolla, Mauro,

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Draft genome sequence of Chromatium okenii isolated from the stratified alpine Lake Cadagno .

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