Kurz, Mirjam; Carnal, Simon; Dafny-Yelin, Mery; Mairesse, Orly; Gottsberger, Richard A.; Ivanović, Milan; Grahovac, Mila; Lagonenko, Alexander L.; Drenova, Nataliya; Zharmukhamedova, Galiya; Doolotkeldieva, Tinatin; Smits, Theo H.M.; Rezzonico, Fabio,

2021.

Tracking the dissemination of Erwinia amylovora in the Eurasian continent using a PCR targeted on the duplication of a single CRISPR spacer.

Phytopathology Research.

3(18).

Available from: https://doi.org/10.1186/s42483-021-00096-9

Moretti, Chiaraluce; Rezzonico, Fabio; Orfei, Benedetta; Cortese, Chiara; Moreno‐Pérez, Alba; van den Burg, Harrold A.; Onofri, Andrea; Firrao, Giuseppe; Ramos, Cayo; Smits, Theo H.M.; Buonaurio, Roberto,

2021.

Synergistic interaction between the type III secretion system of the endophytic bacterium Pantoea agglomerans DAPP‐PG 734 and the virulence of the causal agent of olive knot Pseudomonas savastanoi pv. savastanoi DAPP‐PG 722.

Molecular Plant Pathology.

22(10), pp. 1209-1225.

Available from: https://doi.org/10.1111/mpp.13105

Kałużna, Monika; Fischer‐Le Saux, Marion; Pothier, Joël; Jacques, Marie‐Agnès; Obradović, Aleksa; Tavares, Fernando; Stefani, Emilio,

2021.

Xanthomonas arboricola pv. juglandis and pv. corylina: Brothers or distant relatives? : genetic clues, epidemiology, and insights for disease management.

Molecular Plant Pathology.

Available from: https://doi.org/10.1111/mpp.13073

Mainetti, Tamara; Palmisano, Marilena; Rezzonico, Fabio; Stres, Blaž; Kern, Susanne; Smits, Theo H. M.,

2021.

Broad diversity of bacteria degrading 17ß-estradiol-3-sulfate isolated from river sediment and biofilm at a wastewater treatment plant discharge.

Archives of Microbiology.

203(7), pp. 4209-4219.

Available from: https://doi.org/10.1007/s00203-021-02409-0

Cottyn, B.; De Paepe, B.; Dia, Nay; Van Malderghem, C.; Pothier, Joël; Van Vaerenbergh, J.,

2021.

First report of bacterial leaf spot of Hydrangea in retail nurseries in Belgium caused by strains assigned to a new Xanthomonas hortorum clade.

New Disease Reports.

43(2), pp. e12008.

Available from: https://doi.org/10.1002/ndr2.12008

Catara, Vittoria; Cubero, Jaime; Pothier, Joël; Bosis, Eran; Bragard, Claude; Đermić, Edyta; Holeva, Maria C.; Jacques, Marie-Agnès; Petter, Francoise; Pruvost, Olivier; Robène, Isabelle; Studholme, David J.; Tavares, Fernando; Vicente, Joana G.; Koebnik, Ralf; Costa, Joana,

2021.

Trends in molecular diagnosis and diversity studies for phytosanitary regulated Xanthomonas.

Microorganisms.

9(4), pp. 862.

Available from: https://doi.org/10.3390/microorganisms9040862

Fernandes, Camila; Martins, Leonor; Teixeira, Miguel; Blom, Jochen; Pothier, Joël; Fonseca, Nuno A.; Tavares, Fernando,

2021.

Comparative genomics of Xanthomonas euroxanthea and Xanthomonas arboricola pv. juglandis strains isolated from a single walnut host tree.

Microorganisms.

9(3), pp. 624.

Available from: https://doi.org/10.3390/microorganisms9030624

Doolotkeldieva, Tinatin; Bobushova, Saikal; Carnal, Simon; Rezzonico, Fabio,

2021.

Genetic characterization of Erwinia amylovora isolates detected in the wild walnut‑fruit forest of South Kyrgyzstan.

Journal of Plant Pathology.

103(Suppl 1), pp. 109-120.

Available from: https://doi.org/10.1007/s42161-021-00752-1

Schmautz, Zala; Espinal, Carlos A.; Smits, Theo H. M.; Frossard, Emmanuel; Junge, Ranka,

2021.

Nitrogen transformations across compartments of an aquaponic system.

Aquacultural Engineering.

92(102145).

Available from: https://doi.org/10.1016/j.aquaeng.2021.102145

Schmautz, Zala; Espinal, Carlos A.; Bohny, Andrea M.; Rezzonico, Fabio; Junge, Ranka; Frossard, Emmanuel; Smits, Theo H. M.,

2021.

Environmental parameters and microbial community profiles as indication towards microbial activities and diversity in aquaponic system compartments.

BMC Microbiology.

21(12).

Available from: https://doi.org/10.1186/s12866-020-02075-0

Doering, Michael; Freimann, Remo; Antenen, Nadine; Roschi, Alexia; Robinson, Christopher T.; Rezzonico, Fabio; Smits, Theo; Tonolla, Diego,

2021.

Microbial communities in floodplain ecosystems in relation to altered flow regimes and experimental flooding.

Science of the Total Environment.

788(147497).

Available from: https://doi.org/10.1016/j.scitotenv.2021.147497

Puławska, Joanna; Kałużna, Monika; Warabieda, Wojciech; Pothier, Joël F.; Gétaz, Michael; van der Wolf, Jan M.,

2020.

Transcriptome analysis of Xanthomonas fragariae in strawberry leaves.

Scientific Reports.

10(20582).

Available from: https://doi.org/10.1038/s41598-020-77612-y

Gaganidze, Dali; Sadunishvili, Tinatin; Aznarashvili, Mariam; Abashidze, Ekaterine; Gurielidze, Manana; Carnal, Simon; Rezzonico, Fabio; Zubadalashvili, Manana,

2020.

Fire blight distribution in Georgia and characterization of selected Erwinia amylovora isolates.

Journal of Plant Pathology.

103(Suppl 1), pp. 121-129.

Available from: https://doi.org/10.1007/s42161-020-00700-5

Murray, Alison E.; Freudenstein, John; Gribaldo, Simonetta; Hatzenpichler, Roland; Hugenholtz, Philip; Kämpfer, Peter; Konstantinidis, Konstantinos T.; Lane, Christopher E.; Papke, R. Thane; Parks, Donovan H.; Rossello-Mora, Ramon; Stott, Matthew B.; Sutcliffe, Iain C.; Thrash, J. Cameron; Venter, Stephanus N.; Whitman, William B.; Acinas, Silvia G.; Amann, Rudolf I.; Anantharaman, Karthik; Armengaud, Jean; Baker, Brett J.; Barco, Roman A.; Bode, Helge B.; Boyd, Eric S.; Brady, Carrie L.; Carini, Paul; Chain, Patrick S. G.; Colman, Daniel R.; DeAngelis, Kristen M.; de los Rios, Maria Asuncion; Estrada-de los Santos, Paulina; Dunlap, Christopher A.; Eisen, Jonathan A.; Emerson, David; Ettema, Thijs J. G.; Eveillard, Damien; Girguis, Peter R.; Hentschel, Ute; Hollibaugh, James T.; Hug, Laura A.; Inskeep, William P.; Ivanova, Elena P.; Klenk, Hans-Peter; Li, Wen-Jun; Lloyd, Karen G.; Löffler, Frank E.; Makhalanyane, Thulani P.; Moser, Duane P.; Nunoura, Takuro; Palmer, Marike; Parro, Victor; Pedrós-Alió, Carlos; Probst, Alexander J.; Smits, Theo; Steen, Andrew D.; Steenkamp, Emma T.; Spang, Anja; Stewart, Frank J.; Tiedje, James M.; Vandamme, Peter; Wagner, Michael; Wang, Feng-Ping; Yarza, Pablo; Hedlund, Brian P.; Reysenbach, Anna-Louise,

2020.

Author correction : roadmap for naming uncultivated archaea and bacteria.

Nature Microbiology.

6(1), pp. 136.

Available from: https://doi.org/10.1038/s41564-020-00827-2

Dia, Nay C.; Rezzonico, Fabio; Smits, Theo H. M.; Pothier, Joël F.,

2020.

Complete or high-quality draft genome sequences of six Xanthomonas hortorum strains sequenced with short- and long-read technologies.

Microbiology Resource Announcements.

9(41), pp. e00828-20.

Available from: https://doi.org/10.1128/MRA.00828-20

Martins, Leonor; Fernandes, Camila; Blom, Jochen; Dia, Nay C.; Pothier, Joël F.; Tavares, Fernando,

2020.

Xanthomonas euroxanthea sp. nov. : a new xanthomonad species including pathogenic and non-pathogenic strains of walnut.

International Journal of Systematic and Evolutionary Microbiology.

70(12), pp. 6024-6031.

Available from: https://doi.org/10.1099/ijsem.0.004386

Kaufmann, Moritz; Schüle, Martin; Smits, Theo; Pothier, Joël,

2020.

Typing plasmids with distributed sequence representation [paper].

In:

Schilling, Frank-Peter; Stadelmann, Thilo, eds.,

Artificial Neural Networks in Pattern Recognition.

9th IAPR TC 3 Workshop on Artificial Neural Networks for Pattern Recognition (ANNPR'20), Winterthur, Switzerland, 2-4 September 2020.

Cham:

Springer.

pp. 200-210.

Lecture Notes in Computer Science ; 12294.

Available from: https://doi.org/10.1007/978-3-030-58309-5_16

Gétaz, Michael; Puławska, Joanna; Smits, Theo H.M.; Pothier, Joël F.,

2020.

Host–pathogen interactions between Xanthomonas fragariae and its host Fragaria × ananassa investigated with a dual RNA-Seq analysis.

Microorganisms.

8(8), pp. 1253.

Available from: https://doi.org/10.3390/microorganisms8081253

Gétaz, Michael; Blom, Jochen; Smits, Theo H. M.; Pothier, Joël F.,

2020.

Comparative genomics of Xanthomonas fragariae and Xanthomonas arboricola pv. fragariae reveals intra- and interspecies variations.

Phytopathology Research.

2020(2), pp. 17.

Available from: https://doi.org/10.1186/s42483-020-00061-y

Escursell, Mireia Marcé; Roschi, Alexia; Smits, Theo; Rezzonico, Fabio,

2020.

Characterization and direct molecular discrimination of rpsL mutations leading to high streptomycin resistance in Erwinia amylovora.

Journal of Plant Pathology.

103(Suppl 1), pp. 99-108.

Available from: https://doi.org/10.1007/s42161-020-00600-8