Dr. Brion Duffy

Dr. Brion Duffy

Dr. Brion Duffy
ZHAW Life Sciences und Facility Management
Grüental
8820 Wädenswil

+41 (0) 58 934 52 91
brion.duffy@zhaw.ch

Persönliches Profil

Leitungsfunktion

  • Leitung Fachstelle Umweltgenomik und Systembiologie

Projekte

Projektleitung

Mitarbeit an folgenden Projekten

Publikationen

Beiträge, peer-reviewed

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A diagnostic tool for improved detection of Xanthomonas fragariae using a rapid and highly specific LAMP assay designed with comparative genomics

.

Plant Pathology, 66, 7. 1094-1102. Peer reviewed.

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Comparative genomics-informed design of two LAMP detection assays for detection of the kiwifruit pathogen Pseudomonas syringae pv. actinidiae and discrimination of isolates belonging to the pandemic biovar 3

.

Plant Pathology, 66, 1. 140-9. Peer reviewed.

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Development and evaluation of a bioinformatics approach for designing molecular assays for viral detection

.

PLoS ONE, 12, 5. e0178195. Peer reviewed.

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Engineering of bacteriophages Y2::dpoL1-C and Y2::luxAB for efficient control and rapid detection of the fire blight pathogen, Erwinia amylovora

.

Applied and Environmental Microbiology, 83, 12. e00341-17. Peer reviewed.

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Phylogenomic resolution of the bacterial genus Pantoea and its relationship with Erwinia and Tatumella

.

Antonie van Leeuwenhoek, 110, 10. 1287-1309. Peer reviewed.

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Role of the type VI secretion systems during disease interactions of Erwinia amylovora with its plant host

.

BMC Genomics, 16 628. Peer reviewed.

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Erwinia gerundensis sp. nov., a cosmopolitan epiphyte originally isolated from pome fruit trees

.

International Journal of Systematic and Evolutionary Microbiology, 66, 3. 1583-1592. Peer reviewed.

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Fire blight disease reactome: RNA-seq transcriptional profile of apple host plant defence responses to Erwinia amylovora pathogen infection

.

Scientific Reports, 6 21600. Peer reviewed.

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Insect pathogenicity in plant-beneficial pseudomonads: phylogenetic distribution and comparative genomics

.

The ISME Journal, 10 2527-2542. Peer reviewed.

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Metagenomic diagnostics for the simultaneous detection of multiple pathogens in human stool specimens from Côte d’Ivoire: a proof-of-concept study

.

Infection, Genetics and Evolution, 40 389-397. Peer reviewed.

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Complete genome sequence of the cyanogenic phosphate-solubilizing Pseudomonas sp. strain CCOS 191, a close relative of Pseudomonas mosseli

.

Genome Announcements, 3, 3. e00616-15. Peer reviewed.

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Draft genome sequence of the commercial biocontrol strain Pantoea agglomerans P10c

.

Genome Announcements, 3, 6. e01448-15. Peer reviewed.

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Evaluation of a real-time PCR and a loop-mediated isothermal amplification for detection of Xanthomonas arboricola pv. pruni in plant tissue samples

.

Journal of Microbiological Methods, 112 36-39. Peer reviewed.

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Integrative conjugative elements of the ICEPan family play a potential role in Pantoea ananatis ecological diversification and antibiosis

.

Frontiers in Microbiology, 6 576. Peer reviewed.

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Protection of Erwinia amylovora bacteriophage Y2 from UV-induced damage by natural compounds

.

Bacteriophage, 5, 4. e1074330. Peer reviewed.

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A novel plasmid pEA68 of Erwinia amylovora and the description of a new family of plasmids

.

Archives of Microbiology, 196, 12. 891-899. Peer reviewed.

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Dickeya solani sp. nov., a pectinolytic plant-pathogenic bacterium isolated from potato (Solanum tuberosum)

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International Journal of Systematic and Evolutionary Microbiology, 64 768-774. Peer reviewed.

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Draft genome sequences for the onion center roth pathogen Pantoea ananatis PA4 and maize brown stalk rot pathogen P. ananatis BD442

.

Genome Announcements, 2, 4. e00750-14. Peer reviewed.

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Phenotypic comparison of clinical and plant-beneficial strains of Pantoea agglomerans

.

International Microbiology, 17: 81-90. Peer reviewed.

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Phylogeography and population structure of the biologically invasive phytopathogen Erwinia amylovora inferred using minisatellites

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Environmental Microbiology, 16: 2112-2125. Peer reviewed.

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Transcriptional profile of Salmonella enterica subsp. enterica serovar Weltevreden during alfalfa sprout colonization

.

Microbial Biotechnology, 7, 6. 528–544. Peer reviewed.

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Whole-genome sequencing of Erwinia amylovora strains from México detects SNPs in rpsL conferring streptomycin resistance and in the avrRpt2 effector altering host interactions

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Genome Announcements, 2:, 1. e01229-13. Peer reviewed.

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Comparative genomics of 12 strains of Erwinia amylovora identifies a pan-genome with a large conserved core

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PLoS One, 8 e55644. Peer reviewed.

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Comparative RNA-Seq analysis of early-infected peach leaves by the invasive phytopathogen Xanthomonas arboricola pv. pruni

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PLoS ONE, 8, e54196. Peer reviewed.

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Complete sequence of Erwinia piriflorinigrans plasmids pEPIR37 and pEPIR5 and role of pEPIR37 in pathogen virulence

.

Plant Pathology, 62 786-798. Peer reviewed.

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Erwinia amylovora loop-mediated isothermal amplification (LAMP) assay for rapid pathogen detection and on-site diagnosis of fire blight

.

Journal of Microbiological Methods, 92: 332-339. Peer reviewed.

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Genomics-informed design of loop-mediated isothermal amplification for detection of phytopathogenic Xanthomonas arboricola pv. pruni at the intraspecific level

.

Plant Pathology, 62 475-484. Peer reviewed.

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Identification of a major QTL for Xanthomonas arboricola pv. pruni resistance in apricot

.

Tree Genetics and Genomes, 9 409-421. Peer reviewed.

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Phylogenetic position and virulence apparatus of the pear flower necrosis pathogen Erwinia piriflorinigrans CFBP 5888T as assessed by comparative genomics

.

Systematic and Applied Microbiology, 36: 449-456. Peer reviewed.

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Xanthomonas arboricola pv. fragariae: what's in a name?

.

Plant Pathology, 62 1123-1131. Peer reviewed.

Beiträge, nicht peer-reviewed

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Spatio-temporal transcriptional effects of compatible pathogen attack in tomato

.

Acta Horticulturae in press.

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Do susceptible plants recognize their enemy?

: Presentation.

In: FA1306 Working Group 2 Meeting. Conference. Versailles: INRA.

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Engineered phages for efficient control and rapid detection of viable Erwinia amylovora cells

.

In: Viruses of Microbes Conference. Vortrag. Liverpool: 18.-22. Juli.

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Bakteriophagen zur Bekämpfung von Feuerbrand

: Posterpräsentation.

In: Gemeinsam gegen Feuerbrand. 1. Nationale Tagung. Wädenswil: Agroscope.

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Implications of the phage depolymerase DpoL1 on Erwinia amylovora

: Posterpresentation.

21st biennual Evergreen International Phage Meeting. Olympia (USA)

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Comparative genomics of Erwinia amylovora isolates from Mexico

.

Acta Horticulturae, 1056: 173-177.

; ().

Thirteenth Int'l Workshop on Fire Blight

.

Chronica Horticulturae, 53, 4. 40-41.

; ().

Mycotoxin modulation of chitinase gene expression in a plant-beneficial fungus used for biological control

.

In: IOBC/WPRS bulletin . (77). x: x.

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Signaling between bacterial and fungal biocontrol agents in a strain mixture

.

In: FEMS Microbiology Ecology. (447). x: x.

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Mycotoxigenic Fusarium and deoxynivalenol production repress chitinase gene expression in the biocontrol agent Trichoderma atroviride P1

.

In: Applied and Environmental Microbiology. (3077). x: x.