Publikationen der Forschungsgruppe Umweltgenomik und Systembiologie | ZHAW Institut für Umwelt und Natürliche Ressourcen IUNR

Smits, Theo H.M.; Rezzonico, Fabio; Frasson, David; Vesga, Pilar; Vacheron, Jordan; Blom, Jochen; Pothier, Joël F.; Keel, Christoph; Maurhofer, Monika; Sievers, Martin,

2019.

Updated genome sequence and annotation for the full genome of Pseudomonas protegens CHA0.

Microbiology Resource Announcements.

8(39).

Verfügbar unter: https://doi.org/10.1128/MRA.01002-19

Rutz, Dominik; Frasson, David; Sievers, Martin; Blom, Jochen; Rezzonico, Fabio; Pothier, Joël; Smits, Theo,

2018.

High-quality draft genome sequence of pseudomonas wadenswilerensis CCOS 864T.

Microbiology Resource Announcements.

7(16).

Verfügbar unter: https://doi.org/10.1128/MRA.01059-18

Fernandes, Camila; Blom, Jochen; Pothier, Joël F.; Tavares, Fernando,

2018.

High-quality draft genome sequence of xanthomonas arboricola pv. juglandis CPBF 1521, isolated from leaves of a symptomatic walnut tree in Portugal without a past of phytosanitary treatment.

Microbiology Resource Announcements.

7(16).

Verfügbar unter: https://doi.org/10.1128/MRA.00887-18

Fernandes, Camila; Blom, Jochen; Pothier, Joël F.; Tavares, Fernando,

2018.

High-Quality draft genome sequence of xanthomonas sp. strain CPBF 424, a walnut-pathogenic strain with atypical features.

Microbiology Resource Announcements.

7(15).

Verfügbar unter: https://doi.org/10.1128/MRA.00921-18

Luedin, Samuel M.; Storelli, Nicola; Danza, Francesco; Roman, Samuele; Wittwer, Matthias; Pothier, Joël; Tonolla, Mauro,

2018.

Anoxygenic photosynthesis and dark carbon metabolism under micro-oxic conditions in the purple sulfur bacterium "Thiodictyon syntrophicum" nov. strain Cad16T.

bioRxiv.

Verfügbar unter: https://doi.org/10.1101/420927

Pillonetto, Marcelo; Arend, Lavinia; Gomes, Suzie M. T.; Oliveira, Marluce A. A.; Timm, Loeci N.; Martins, Andreza F.; Barth, Afonso L.; Mazzetti, Alana; Hersemann, Lena; Smits, Theo H. M.; Mira, Marcelo T.; Rezzonico, Fabio,

2018.

Molecular investigation of isolates from a multistate polymicrobial outbreak associated with contaminated total parenteral nutrition in Brazil.

BMC Infectious Diseases.

18(397), S. 1-11.

Verfügbar unter: https://doi.org/10.1186/s12879-018-3287-2

Normand, Philippe; Nouioui, Imen; Pujic, Petar; Fournier, Pascale; Dubost, Audrey; Schwob, Guillaume; Klenk, Hans-Peter; Nguyen, Agnès; Abrouk, Danis; Herrera-Belaroussi, Aude; Pothier, Joël F.; Pflüger, Valentin; Fernandez, Maria P.,

2018.

Frankia canadensis sp. nov., isolated from root nodules of Alnus incana subspecies rugosa.

International Journal of Systematic and Evolutionary Microbiology.

68, S. 3001-3011.

Verfügbar unter: https://doi.org/10.1099/ijsem.0.002939

Dennert, Francesca; Imperiali, Nicola; Staub, Cornelia; Schneider, Jana; Laessle, Titouan; Zhang, Tao; Wittwer, Raphaël; van der Heijden, Marcel G A; Smits, Theo H M; Schlaeppi, Klaus; Keel, Christoph; Maurhofer, Monika,

2018.

Conservation tillage and organic farming induce minor variations in Pseudomonas abundance, their antimicrobial function and soil disease resistance.

FEMS Microbiology Ecology.

94(8), S. fiy075.

Verfügbar unter: https://doi.org/10.1093/femsec/fiy075

Kopp, Max; Mannale, Michael; Vincent, Michel; Palmisano, Marilena; Thoss, Hagen; Wohler, Christian,

2018.

Botrytis-Resistenzen auf Erdbeeren.

Schweizer Obst.

2018(2), S. 33-37.

Verfügbar unter: https://doi.org/10.21256/zhaw-3924

Naas, Hiba; Sebaihia, Mohammed; Orfei, Benedetta; Rezzonico, Fabio; Buonaurio, Roberto; Moretti, Chiaraluce,

2018.

Pectobacterium carotovorum subsp. brasiliense and Pectobacterium carotovorum subsp. carotovorum as causal agents of potato soft rot in Algeria.

European Journal of Plant Pathology.

151(4), S. 1027-1034.

Verfügbar unter: https://doi.org/10.1007/s10658-018-1438-3

Luedin, Samuel M.; Pothier, Joël F.; Danza, Francesco; Storelli, Nicola; Frigaard, Niels-Ulrik; Wittwer, Matthias; Tonolla, Mauro,

2018.

Complete genome sequence of “Thiodictyon syntrophicum” sp. nov. strain Cad16T, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake Cadagno.

Standards in Genomic Sciences.

13(14).

Verfügbar unter: https://doi.org/10.1186/s40793-018-0317-z

Pillonetto, Marcelo; Arend, Lavinia N.; Faoro, Helisson; D'Espindula, Helena R. S.; Blom, Jochen; Smits, Theo H. M.; Mira, Marcelo T.; Rezzonico, Fabio,

2018.

Emended description of the genus phytobacter, its type species phytobacter diazotrophicus (Zhang 2008) and description of phytobacter ursingii sp. nov.

International Journal of Systematic and Evolutionary Microbiology.

68, S. 176-184.

Verfügbar unter: https://doi.org/10.1099/ijsem.0.002477

Gétaz, Michael; Krijger, Marjon; Rezzonico, Fabio; Smits, Theo; van der Wolf, Jan M.; Pothier, Joël F.,

2018.

Genome-based population structure analysis of the strawberry plant pathogen Xanthomonas fragariae reveals two distinct groups that evolved independently before its species description.

Microbial Genomics.

4(7).

Verfügbar unter: https://doi.org/10.1099/mgen.0.000189

Gétaz, Michael; Baeyen, Steve; Blom, Jochen; Maes, Martine; Cottyn, Bart; Pothier, Joël F.,

2018.

High-quality draft genome sequences of five xanthomonas arboricola pv. fragariae isolates.

Genome Announcements.

6(7).

Verfügbar unter: https://doi.org/10.1128/genomeA.01585-17

Smits, Theo; Duffy, Brion; Sundin, George; Zhao, Youfu; Rezzonico, Fabio,

2017.

Erwinia amylovora in the genomics era : from genomes to pathogen virulence, regulation, and disease control strategies.

Journal of Plant Pathology.

99(Special issue), S. 7-23.

Verfügbar unter: https://doi.org/10.4454/jpp.v99i0.3917

Rezzonico, Fabio; Duffy, Brion; Smits, Theo H.M.; Pothier, Joël F.,

2017.

Erwinia species identification using matrix-assisted laser desorption ionization-time of flight mass spectrometry.

Journal of Plant Pathology.

99(Special issue), S. 121-129.

Verfügbar unter: https://doi.org/10.4454/jpp.v99i0.3916

Ishimaru, Carol; Lansdell, Teresa A.; Clardy, Jon; Duffy, Brion; Smits, Theo H.M.,

2017.

The histidine-reversible antibiotic herbicolin O produced by Pantoea vagans C9-1 is pantocin A.

Journal of Plant Pathology.

99(Special issue), S. 91-97.

Verfügbar unter: https://doi.org/10.4454/jpp.v99i0.3910

De Maayer, Pieter; Aliyu, Habibu; Vikram, Surendra; Blom, Jochen; Duffy, Brion; Cowan, Don A.; Smits, Theo H.M.; Venter, Stephanus N.; Coutinho, Teresa A.,

2017.

Phylogenomic, pan-genomic, pathogenomic and evolutionary genomic insights into the agronomically relevant enterobacteria Pantoea ananatis and Pantoea stewartii.

Frontiers in Microbiology.

8, S. 1755.

Verfügbar unter: https://doi.org/10.3389/fmicb.2017.01755

Gétaz, Michael; Bühlmann, Andreas; Schneeberger, Pierre H. H.; Van Malderghem, Cinzia; Duffy, Brion; Maes, Martine; Pothier, Joël F.; Cottyn, Bart,

2017.

A diagnostic tool for improved detection of Xanthomonas fragariae using a rapid and highly specific LAMP assay designed with comparative genomics.

Plant Pathology.

66(7), S. 1094-1102.

Verfügbar unter: https://doi.org/10.1111/ppa.12665

Frasson, David; Opoku, Michael; Picozzi, Tara; Torossi, Tania; Balada, Stefanie; Smits, Theo; Hilber, Urs,